BAC Information

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BAC

Clone NameMSMg01-423M02
Chromosome7 (Build37)
Map Location 72,148,859 - 72,149,103
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423M02.T7 (MSMg01no423_m02.b1)MSMg01-423M02.TJ (MSMg01no423_m02.g1)
ACCAG517837AG517838
length740732
length of high quality
(start - end)
541 (58 - 598)245 (65 - 309)
definitionCHROMAT_FILE: MSMg01no423_m02.b1 PHD_FILE: MSMg01no423_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:30 2005CHROMAT_FILE: MSMg01no423_m02.g1 PHD_FILE: MSMg01no423_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCCATTCC
TTTCGCATAGAAAATATTTTCAATAAAATCTCAGAAGAAACTTTCCAACA
TGTGTGGAAAGAGAGGCTGATCTGGATACAAGAAGCATACAGAATAGCAA
ATACACAGGACTAGAAAATAAACTCACTACATCATGTTATAGTTAAAACA
CTGAAAAGATGAAAGAAAAACATTTATTTAAAGCTCTAAGAAAATAAGGC
AAATTCAGACATAGAGGCAGGCCCCCCAGAAGAACAGCTGATTCTCTAAT
GGAAAGCTTAAAACCAAGAAGAGCTTAGAGAGATGCATTTTATATTTCAA
AAGGCCACAACTGCCAATCCAGCCCAACAAACTCTCCCAAACTATCTGTT
ATAACCGAAGGAGCAGGAAAAACATTCTACAGTACACAGGCTAAAAGAAT
TTATGAGCACCAAGCCAGCCCTACCCAGGAGACTAGAAGAAATACTTCAG
GGTGAAGAAAAAAAAATAAACACAGAAGACACTACAAGGAAAAACTAAAC
AATGCTAAGGTAGTCATTAAGCAAAAGAGGGCTAAGAAAAACGCAACACC
ACAAATTCAACAGAATGACAGAGAGGCATGCATGTCTTACAGAGAAAACT
CTGAATATAGATAGTCTCAACTTTCCTATCAAAAGGCGCAGACTAGCAAA
CTAGATTACAAACCCGAAGTTTTTTCTTTTTGCTTCCTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGGTGGAGAAAGCCGGGGACTGTTACCCCTTCC
CTTTCCTTTCATTACTCTGGCCCTTCTTTCCTAATTGTTATGAAAAGTGG
ACCAAAGGCAATGCCTTACTAGTTTTTCATTACTATAATAAAATACCAGA
GGCTGAGTACTTTTGGAGCAAAGAGGTCTGTTCAGCCCATGGATGTAGAG
GCTGAAATCAAATAACACAGCAACAACTCTGGTGAGGTCCTGTTGGCGGC
ATCACCTCATGTTTACTAGCACTGAGAGGGGTGAGGTTTGAGAAGGAAAG
ATCACTTTGCAAGGGTGGAGGCCAGAGAAACTGAGTCCCACAGTTCCTAT
GTTGACCTAAAGACTTTTGACAAGGTCTCACTGTCTAAAGATCCCACCCT
CAACATCATCGCACTGAAGACAGCTCCCACCACATGAGCCTTTGGGCACT
CACTCAAATCATACCCAAGCCTTTCCTGATGGCCTCTGAATTCAGGGGCC
TGGCTTGCTAATTTCCTCAAAGCAAGCTGAAACCTGTTGGTTTGAAAGAC
TCCTGGTACCTATCTCAAAACTTCATACATATAATATTTGAAAAAACATA
ACCTAAGGAGATCCTAGCTGCTGAAATCCTTGCTTTGCATTCCTCGTAAG
ACCTCCCCAGCACGTATTGACTGCTGATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_m02.g1 MSMg01no423_m02.g1 CHROMAT_FILE:
MSMg01no423_m02.g1 PHD_FILE: MSMg01no423_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:31 2005
         (245 letters)



>mm_chr7_72148788_72149432
          Length = 645

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggtgga-gaaagccggggactgttaccccttccctttcctttcattactctggccc 59
           ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 316 ttcaggt-gatgaaagccggggactgttaccccttcccttccctttcattactctggccc 258

                                                                       
Query: 60  ttctttcctaattgttatgaaaagtggaccaaaggcaatgccttactagtttttcattac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttctttcctaattgttatgaaaagtggaccaaaggcaatgccttactagtttttcattac 198

                                                                       
Query: 120 tataataaaataccagaggctgagtacttttggagcaaagaggtctgttcagcccatgga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tataataaaataccagaggctgagtacttttggagcaaagaggtctgttcagcccatgga 138

                                                                       
Query: 180 tgtagaggctgaaatcaaataacacagcaacaactctggtgaggtcctgttggcggcatc 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgtagaggctgaaatcaaatagcacagcaacaactctggtgaggtcctgttggcggcatc 78

                 
Query: 240 acctca 245
           ||||||
Sbjct: 77  acctca 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)