BAC Information

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BAC

Clone NameMSMg01-424D15
Chromosome7 (Build37)
Map Location 115,933,719 - 115,934,136
singlet/doubletsinglet
Overlap genenone
Upstream geneOvch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513
Downstream geneOlfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D15.T7 (MSMg01no424_d15.b1)MSMg01-424D15.TJ (MSMg01no424_d15.g1)
ACCAG518197AG518198
length729751
length of high quality
(start - end)
572 (48 - 619)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no424_d15.b1 PHD_FILE: MSMg01no424_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:08 2005CHROMAT_FILE: MSMg01no424_d15.g1 PHD_FILE: MSMg01no424_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGTATTCCTGAAGACCAGCTCAAATATCCAGTTTTATTGGCT
GAACAACTACTGGATTTTTGGGCTTTCTATTGGTAGACAGCCATTGTTGG
ATTAGCTGGACTGTAACCTGAAAATCCTTTTTTACATAATCCATTTTCTA
CATAATACATACATACATACATACATATATATATATATATATATACATAT
ACATATATACAGGTGTATGTATTTACACCCCCACCTACACATATTCATTC
TATTAGTTCTGTTCCTATAGATAACTCTAATACAGCCAAATTTGTATATA
TATGTACATATGTATACATACACATATATACATATAACATATGTTTATAG
TTTTTCATTTATGTAGTATCAGTGCAATATGTTATTTTAACTGCTACATT
TTTATTATGGTGTATCCTCAATCTAATAATGGAAATTATTCCACTGTCCA
TTTTTACTGCTTAAAATTGTATCTTATAAAGTTAACAGAGAACTATGTGT
AAACTATTTTTAAAAGCTATGGTGTGTAGACTAGTAATAAATACATCAGG
AATACTCAATTTCCTTCAACTTAGACAAGTGGCAACTATGCCCATTTTGT
TTATATATTAAGCCTTATGCACACAATTTTGTTTGCATAAGTTCTTTCAT
GTGCACTGCTAAGAATCCTTTCTTTATGT
NCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATGTGACCTTAAAACATTTAT
TCTCCCATCACTCAACACACAATAATATAAGATGACACCTCCATAATGTT
TCCATAAGATCAGGATGTGGGTCATTCTGTAGAGCATTTTCCTAATTAGT
GATTGATGAGGTGGTTCCAGCCCATTATGGGTGGTACTACCTCTAGGCTG
GTGATACAGGATTCACTAAGAAAACAAAATAAAAACAATTTAAATGTTTA
TGTAAGGGAAGGATCTGTCTTATTATATGTTCAGAAGAAGATGCACAGTA
TAAGTGTCATTTCCAGAGTTCAACTTTGTTTAATATTCTTAGTATTCATT
TTCAAGATTTATCCTCCTGTCATCCAAAATGCAATAACATATGACCATAT
CTAAGATACCTTTCATTATGGTAATTTGAAGTCCATGTTAGGCAATAAAT
TAGGTATATTAAGTACCCAAACCAAAAAAATTATGATGGGTTTTCCCCAT
CATCTGTCCAAAGTTTTATTATATTCCTAAGTAAACTCAGCTCTCCTTAT
ACTTTTCTGTTATAACTGAGCTAGCTCCTTTATTGTGATTGTGTACTGTT
ATCTTCTTATGTTTCCACTTTCAGGGCTTTANTAGAAAGCTCCGATTTGT
ACTGTATCTGTTCACTATTACTTCTCACCATTTTTACAAATTTTTTCCCG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d15.b1 MSMg01no424_d15.b1 CHROMAT_FILE:
MSMg01no424_d15.b1 PHD_FILE: MSMg01no424_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:08 2005
         (572 letters)



>mm_chr7_115933167_115934139
          Length = 973

 Score =  725 bits (375), Expect = 0.0
 Identities = 410/423 (96%), Gaps = 7/423 (1%)
 Strand = Plus / Minus

                                                                       
Query: 152 tacata-atacatacatacatacatacatatatatatatatatatatacatatacatata 210
           |||||| ||||||||||||||||||||||| ||| |||||||||||   | |||||||||
Sbjct: 970 tacatacatacatacatacatacatacatacatacatatatatata---a-atacatata 915

                                                                       
Query: 211 tacaggtgtatgtatttacacccccacctacacatattcattctattagttctgttccta 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tacaggtgtatgtatttacacccccacctacacatattcattctattagttctgttccta 855

                                                                       
Query: 271 tagataactctaatacagccaaatttgtatatatatgtacatatgtatacatacacatat 330
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 854 tagataactctaatacaaccaaatttgtatatatatgtacatatgtatacatacacata- 796

                                                                       
Query: 331 atacatataacatatgtttatagtttttcatttatgtagtatcagtgcaatatgttattt 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 atacatataacatatgtttatagtttttcatttatgtagtatcagtgcaatatgttattt 736

                                                                       
Query: 391 taactgctacatttttattatggtgtatcctcaatctaataatggaaattattccactgt 450
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taactactacattgttattatggtgtatcctcaatctaataatggaaattattccactgt 676

                                                                       
Query: 451 ccatttttactgcttaaaattgtatcttataaagttaacagagaactatgtgtaaactat 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccatttttactgcttaaaattgtatcttataaagttaacagagaactatgtgtaaactat 616

                                                                       
Query: 511 ttttaaaagctatggtgtgtagactagtaataaatacatcaggaatactca-atttcctt 569
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 ttttaaaagctatggtgtgtaaactagtaataaatacatcaggaatactcatatttcctt 556

              
Query: 570 caa 572
           |||
Sbjct: 555 caa 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)