BAC Information

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BAC

Clone NameMSMg01-424P08
Chromosome7 (Build37)
Map Location 137,548,753 - 137,707,609
singlet/doubletdoublet
Overlap geneAte1, LOC100043163, Nsmce4a
Upstream geneBrwd2, LOC100043150, Fgfr2, LOC546005
Downstream geneTacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424P08.T7 (MSMg01no424_p08.b1)MSMg01-424P08.TJ (MSMg01no424_p08.g1)
ACCAG518755AG518756
length734781
length of high quality
(start - end)		557 (69 - 625)239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no424_p08.b1 PHD_FILE: MSMg01no424_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:02 2005CHROMAT_FILE: MSMg01no424_p08.g1 PHD_FILE: MSMg01no424_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,707,053 - 137,707,609)(137,548,753 - 137,548,976)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCCACATATTCAACTCACTGATACCTGCCATGTCCCGACTTCAAGGG
AGCAGACCTTCTGAGATGGACTCTTCTGTCCCCAAACTTCCTCCTTTTCT
GTCTGATAACAATCCAAGACCCCACACGTCATGAGAGCACAGTCTCCTTT
GTGCAGAGGGACTGTGGGCCTTTAGCTATTATGATGAAAGAATAATTCTG
CCTCTGGGGACACCTGCCTGCTTTCTTTCATTCCCATGTCACTCTATCCA
CTCTGTTACTCTATCCTTTTTATCTAGCAATCTAAATGTCTAAGTCAACA
GAGAAGTTTGGTAAGTACTGTTTGGGTCAACTATACAACCCCACCCCCAT
CCCAGGCAGTACAGTTGCCTATTTTTATATTAGCTTTCCAGGTAGAGGAG
AATAATGGAGGCACCCCAGCTCCTGGACTCCAAAACTTCTTCCCAATATG
AGGAAAAGAAGTGATACACACACAAAGCAAGCCTCTCTCTCTTCAGGGAA
TGGAAAGAGAAGGGTAAGCATGTGTGGCGGTTTGAATAGGTTTGGCCCTC
ATAGGCTTATGTGTTTGAATGCTTGGCCCATGGGGGAGCAGCACTATTAA
TAGGTGTGGCCTTGTTGGAGTAAGTGTGGTCTTGCTGGAGGATGTGTGGA
TCACTGTCAGGGTGAGCTTTCAGGCCTCCTCTAN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTATTCAATAAACTCTGAC
ATTGTGAAAAGTCACAAACTTACTATCTATTTTTCTGGCACAGCATACTG
TGGTAATCAATAATCAATTTCCACTTCTGTACTCATTATGACTTCAGCAA
GAGAGGCAAACCTTAGGAGTACAAGTGAGAGGAATTGGTTCACAGACACA
CATGCAGACAAAACACCCAGACACATATGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGNNNNNNNTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTNNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTNTTTTT
TTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTNTTTTTNTTTTTTTTNTTTTTTTTTNTTTTTTTTTTN
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNNTTTNTN
NTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTNNTTTTTNTTT
NTTTTTTTTTTTTTTTTTTTTTTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_p08.b1 MSMg01no424_p08.b1 CHROMAT_FILE:
MSMg01no424_p08.b1 PHD_FILE: MSMg01no424_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:02 2005
         (557 letters)



>mm_chr7_137706908_137707864
          Length = 957

 Score = 1015 bits (525), Expect = 0.0
 Identities = 549/557 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgatacctgccatgtcccgacttcaagggagcagaccttctgagatggactcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cactgatacctgccatgtcccgacttcaagggagcagaccttctgagatggactcttctg 643

                                                                       
Query: 61  tccccaaacttcctccttttctgtctgataacaatccaagaccccacacgtcatgagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tccccaaacttcctccttttctgtctgataacaatccaagaccccacacgtcatgagagc 583

                                                                       
Query: 121 acagtctcctttgtgcagagggactgtgggcctttagctattatgatgaaagaataattc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 582 acagtctcctttgtgcagagggactgtaggcctttagctattatgatgaaagaataattc 523

                                                                       
Query: 181 tgcctctggggacacctgcctgctttctttcattcccatgtcactctatccactctgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgcctctggggacacctgcctgctttctttcattcccatgtcactctatccactctgtta 463

                                                                       
Query: 241 ctctatcctttttatctagcaatctaaatgtctaagtcaacagagaagtttggtaagtac 300
           |||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctctatccatccaatctagcaatctaaatgtctaagtcaacagagaagtttggtaagtac 403

                                                                       
Query: 301 tgtttgggtcaactatacaaccccacccccatcccaggcagtacagttgcctatttttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgtttgggtcaactatacaaccccacccccatcccaggcagtacagttgcctatttttat 343

                                                                       
Query: 361 attagctttccaggtagaggagaataatggaggcaccccagctcctggactccaaaactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 342 attagctttccaggtagaggagaataatggaggcaccccagctcctggactccaaaattt 283

                                                                       
Query: 421 cttcccaatatgaggaaaagaagtgatacacacacaaagcaagcctctctctcttcaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cttcccaatatgaggaaaagaagtgatacacacacaaagcaagcctctctctcttcaggg 223

                                                                       
Query: 481 aatggaaagagaagggtaagcatgtgtggcggtttgaataggtttggccctcataggctt 540
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 222 aatggaaagagaagggtaagcacgcgtggcggtttgaataggtttggccctcataggctt 163

                            
Query: 541 atgtgtttgaatgcttg 557
           |||||||||||||||||
Sbjct: 162 atgtgtttgaatgcttg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_p08.g1 MSMg01no424_p08.g1 CHROMAT_FILE:
MSMg01no424_p08.g1 PHD_FILE: MSMg01no424_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:02 2005
         (239 letters)



>mm_chr7_137548553_137549191
          Length = 639

 Score =  410 bits (212), Expect = e-119
 Identities = 221/224 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgttattcaataaactctgacattgtgaaaagtcacaaacttactatctatttttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgttattcaataaactctgacattgtgaaaagtcacaaacttactatctatttttctg 260

                                                                       
Query: 61  gcacagcatactgtggtaatcaataatcaatttccacttctgtactcattatgacttcag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacagcatattgtggtaatcaataatcaatttccacttctgtactcattatgacttcag 320

                                                                       
Query: 121 caagagaggcaaaccttaggagtacaagtgagaggaattggttcacagacacacatgcag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 caagagaggcaaaccttaggagtacaagtgagaggaagtggttcacagacacacatgcag 380

                                                       
Query: 181 acaaaacacccagacacatatggaggaggaggaggaggaggagg 224
           |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 acaaaacacccagacacatatggaggaggaggaggaagaggagg 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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