BAC Information

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BAC

Clone NameMSMg01-426A18
Chromosome7 (Build37)
Map Location 12,515,090 - 12,515,613
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999
Downstream geneV1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A18.T7 (MSMg01no426_a18.b1)MSMg01-426A18.TJ (MSMg01no426_a18.g1)
ACCAG519583AG519584
length797782
length of high quality
(start - end)
529 (41 - 569)427 (72 - 498)
definitionCHROMAT_FILE: MSMg01no426_a18.b1 PHD_FILE: MSMg01no426_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:26 2005CHROMAT_FILE: MSMg01no426_a18.g1 PHD_FILE: MSMg01no426_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTACTTAACAGCACTAACTGTTCTTCCAGAGGTACCAGGTTTTCTTT
CCATCACTCAATAATGGCTCAGAACTATCAGTAATGAAGTCCTAATAGGT
AATGCCTTATTCTAAACTGTGAAAGCATTTTATACATATCCTACACAAAT
ACACATACAAGAAAAATAACCACTTATAAAAAATTAAAAATTATATCTCA
CAAACACAAAGAAATACACACACAAGATGAACAAAGAAAAATATACCTTT
TCATGAGCCATCAGATAATGTTTGGTATCTCCAGTGTATTTTCTAATGTT
CACCTATACTTTGGCTAAAATCACATAACATTCATCAAAATATTATAATT
CAATACATATTTGAAACTGTGCTTATATTTTAATAGTAAATTCTGTACAG
AAACAAAATGCAATGATAAAATAACTACTGATGACTCCACATAATTATAG
GATTCAGTTACAGTAAGCTTTATATTTTCAAACTGCTGCATTAGCATTGC
ACAACAGCATATACCAATATATTTTAAAAAGGTCAGAAATAAAGTCTCAA
ATCCTTTGAGAAAGGTATCTCTTACTAAAGCAGGGTAAAAACACACTTGG
ACCTAGACTTTCATGTTGCTTGAAAAAAACAAAGGGACAAAATATTGGGA
AAGGATATTTTTTATTTATGGGAAAAAACTTAATGTTCCCCTAAAAAAGG
GAATATTTGTGGAAAGTTTTAAAAAACCGCCCACATGGTAAGGAAAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCCCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACGCT
CCTCCATTGTCGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGACATATATCCAGAAGATGCCCCAGCTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTATTCAGCTATTATAAAGAATGAATTTAT
GAAATTCCTAGCCCAATGCATGGATCTGGTAGGGCATCATCCTGAGTGAT
GTTAAATATTCCTCATTGGACTTCTCCTTTATGTTTTCCCCTGACAAGTG
CATTATTATTCCCTAACCCATTTTTCTCTACAAACTATAACCCACTTTGC
TTTATCCCCTTAAATCCACTCTATAATGCTATATTTGTACTTTCCCCCTT
TTATTTTCCCCCTTTTATAATTCGTTGTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a18.b1 MSMg01no426_a18.b1 CHROMAT_FILE:
MSMg01no426_a18.b1 PHD_FILE: MSMg01no426_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:26 2005
         (529 letters)



>mm_chr7_12514886_12515814
          Length = 929

 Score = 1013 bits (524), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtacttaacagcactaactgttcttccagaggtaccaggttttctttccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtacttaacagcactaactgttcttccagaggtaccaggttttctttccat 264

                                                                       
Query: 65  cactcaataatggctcagaactatcagtaatgaagtcctaataggtaatgccttattcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactcaataatggctcagaactatcagtaatgaagtcctaataggtaatgccttattcta 324

                                                                       
Query: 125 aactgtgaaagcattttatacatatcctacacaaatacacatacaagaaaaataaccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactgtgaaagcattttatacatatcctacacaaatacacatacaagaaaaataaccact 384

                                                                       
Query: 185 tataaaaaattaaaaattatatctcacaaacacaaagaaatacacacacaagatgaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tataaaaaattaaaaattatatctcacaaacacaaagaaatacacacacaagatgaacaa 444

                                                                       
Query: 245 agaaaaatataccttttcatgagccatcagataatgtttggtatctccagtgtattttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaaatataccttttcatgagccatcagataatgtttggtatctccagtgtattttct 504

                                                                       
Query: 305 aatgttcacctatactttggctaaaatcacataacattcatcaaaatattataattcaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgttcacctatactttggctaaaatcacataacattcatcaaaatattataattcaat 564

                                                                       
Query: 365 acatatttgaaactgtgcttatattttaatagtaaattctgtacagaaacaaaatgcaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatatttgaaactgtgcttatattttaatagtaaattctgtacagaaacaaaatgcaat 624

                                                                       
Query: 425 gataaaataactactgatgactccacataattataggattcagttacagtaagctttata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gataaaataactactgatgactccacataattataggattcagttacagtaagctttata 684

                                                       
Query: 485 ttttcaaactgctgcattagcattgcacaacagcatataccaat 528
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttcaaactgctgcattagcattgcacaacagcatataccaat 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)