BAC Information

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BAC

Clone NameMSMg01-426D23
Chromosome7 (Build37)
Map Location 151,786,306 - 151,963,930
singlet/doubletdoublet
Overlap geneTmem16a, LOC669079
Upstream geneTnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd
Downstream geneLOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426D23.T7 (MSMg01no426_d23.b1)MSMg01-426D23.TJ (MSMg01no426_d23.g1)
ACCAG519734AG519735
length795790
length of high quality
(start - end)		474 (44 - 517)408 (76 - 483)
definitionCHROMAT_FILE: MSMg01no426_d23.b1 PHD_FILE: MSMg01no426_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:43 2005CHROMAT_FILE: MSMg01no426_d23.g1 PHD_FILE: MSMg01no426_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,963,463 - 151,963,930)(151,786,306 - 151,786,713)
sequence
CCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCAGGACGTTATTCTTGGCCACAAGCACTTTTACCAGAGTAACCGTT
TTGCCGGCCGAAATACCAGTATCTTAGAAACTGGTTCCAGCAGAATGAGC
TCAGCCAGGGGCTGTCAAGTGTCAGGCCTCAGGAGCAAATGGTGGTTTCT
TTCGAGAATTTCAGTGGGAGGTGGACTTCAGCAAAGTCAAATAAAAATGA
TTCATGAACCTCACCCCACCCAGATCCAGTCATGCTCAGTGGCACTCCAG
AGACTCTCAGCCCCAAGGTCAGATCCTCTCCATTCTCCATCTCCCTCCAT
TCAACCCCCTGGGTCACCTATCTATGGTTCTACCCTAGCACATACCCTCC
CCATCATTTTTCTCTTTCTCTGAATCTGGATCTTTCCCCCACCCCCACCC
CCTTCCCTTCTCCCTCTTGCTCCAGCCCACTCGCTCCTGGGCCTCTGCAT
GCTCTGGGTCTCATAAGTCCAGGATGGCCTTAAACTTGCTACGCACGCAA
CTCAAGCTGAACCTCCTGCCTCTACCTCCCAAGTGATGGGATGAACGGGC
CATGGCACCATCCCCGCTTTTGGGGGAAGCTGTGAAATTGAAACCCCGCA
CCTTTGGGAAGGGTATGGGGAACATTCTTAAAATATGGTTCTTCCCTCAA
TCCCCTGGGGGGGCCTTAAAAAAAAGGCTTATTAAAATATTGCGGGGTTT
TTTTTTCCTCTGGCCCAAATTGTTTGGAAGGGCTCCCTCCCTCTT

CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAAGAGGCCATGTGATAAAGG
CTTCTGTAGTCAGGAGCACAGTTGCTACTAGCCAGGGTCTGTGGGGGTGC
AGGCCACCGGCGCCACTGGGTCTCCTGTCCCCTGGGAACACTGTCCCAAA
GACTCTGCACGGATCAAAGGAGGAAGACAAAAGCCCCTTTGAGCAAAAGG
TTACTGCACAGGAGGCCACAAACAACCATGTGAAAGGCAGATCATGCCTC
TAACCAACTGGGCAGGAACCAGGAAGCAGCCGCTGATCCGTGAGGCCTGG
GAAAAAGCAAGGAGCCTGGAGGCAGAAATTCTGAGGGCACACCAGGAGCC
CCATGGGGTGGGGAGGACAGGGAAGCCAGGAGGCCACCCACATACCCTGT
TCAGCTTGGTGGGTTTCTAGGTTTTTAGGGATAGTCTGCCTCTGTCCTGA
AGCACACTTCCCCAAATAGTGGCACATACTCTGTTATATCTACCAAGGGC
ATTTTTGCGAATCTCACCGGACCAGGGTTTGGGCTAATGGTTTTCTCTCT
TTTCCGCCATGGACCTGCAACCTAAGGATGTTTTCCTATTCTCCCTTTGG
GATCCTTCGCCCCCTTTGGCTTCTCTTCTCTTTTAATTCGCTTTGTTTAT
ATAATTCTCCTCCTCTATTTTTATACCTTTGGTCTTTTTCGCCCAACTAT
TTTTCAATTAACATTCTGCTCTATTCTTTCTTTTACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_d23.b1 MSMg01no426_d23.b1 CHROMAT_FILE:
MSMg01no426_d23.b1 PHD_FILE: MSMg01no426_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:43 2005
         (474 letters)



>mm_chr7_151963340_151964213
          Length = 874

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaggacgttattcttggccacaagcacttttaccagagtaaccgttttgccggcc 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 591 gaattcaggacgttagtcttggccacaagcacttttaccagagtaaccgttttgctggct 532

                                                                       
Query: 67  gaaataccagtatcttagaaactggttccagcagaatgagctcagccaggggctgtcaag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaaataccagtatcttagaaactggttccagcagaatgagctcagccaggggctgtcaag 472

                                                                       
Query: 127 tgtcaggcctcaggagcaaatggtggtttctttcgagaatttcagtgggaggtggacttc 186
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 tgtcagacctcaggagcaaatggtggtttcttttgagaatttcagtgggaggtggacttc 412

                                                                       
Query: 187 agcaaagtcaaataaaaatgattcatgaacctcaccccacccagatccagtcatgctcag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agcaaagtcaaataaaaatgattcatgaacctcaccccacccagatccagtcatgctcag 352

                                                                       
Query: 247 tggcactccagagactctcagccccaaggtcagatcctctccattctccatctccctcca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tggcactccagagactctcagccccaaggtcagatcctctccattctccatctccctcca 292

                                                                       
Query: 307 ttcaaccccctgggtcacctatctatggttctaccctagcacataccctccccatcattt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttcaaccccctgggtcacctatctatggttctaccctagcacataccctccccatcattt 232

                                                                       
Query: 367 ttctctttctctgaatctggatctttcccccacccccacccccttcccttctccctcttg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttctctttctctgaatctggatctttcccccacccccacccccttcccttctccctcttg 172

                                                           
Query: 427 ctccagcccactcgctcctgggcctctgcatgctctgggtctcataag 474
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctccagcccactcgctcctgggcctctgcatgctctgggtctcataag 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_d23.g1 MSMg01no426_d23.g1 CHROMAT_FILE:
MSMg01no426_d23.g1 PHD_FILE: MSMg01no426_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:43 2005
         (408 letters)



>mm_chr7_151786106_151786913
          Length = 808

 Score =  781 bits (404), Expect = 0.0
 Identities = 407/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccaagaggccatgtgataaaggcttctgtagtcaggagcacagttgctactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccaagaggccatgtgataaaggcttctgtagtcaggagcacagttgctactagccag 260

                                                                       
Query: 61  ggtctgtgggggtgcaggccaccggcgccactgggtctcctgtcccctgggaacactgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctgtgggggtgcaggccaccggcgccactgggtctcctgtcccctgggaacactgtc 320

                                                                       
Query: 121 ccaaagactctgcacggatcaaaggaggaagacaaaagcccctttgagcaaaaggttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagactctgcacggatcaaaggaggaagacaaaagcccctttgagcaaaaggttact 380

                                                                       
Query: 181 gcacaggaggccacaaacaaccatgtgaaaggcagatcatgcctctaaccaactgggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacaggaggccacaaacaaccatgtgaaaggcagatcatgcctctaaccaactgggcag 440

                                                                       
Query: 241 gaaccaggaagcagccgctgatccgtgaggcctgggaaaaagcaaggagcctggaggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaccaggaagcagccgctgatccgtgaggcctgggaaaaagcaaggagcctggaggcag 500

                                                                       
Query: 301 aaattctgagggcacaccaggagccccatggggtggggaggacagggaagccaggaggcc 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattctgagggcacaccaggaaccccatggggtggggaggacagggaagccaggaggcc 560

                                                           
Query: 361 acccacataccctgttcagcttggtgggtttctaggtttttagggata 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccacataccctgttcagcttggtgggtttctaggtttttagggata 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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