BAC Information

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BAC

Clone NameMSMg01-426G19
Chromosome7 (Build37)
Map Location 110,667,294 - 110,667,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611
Downstream geneEG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426G19.T7 (MSMg01no426_g19.b1)MSMg01-426G19.TJ (MSMg01no426_g19.g1)
ACCAG519868AG519869
length763753
length of high quality
(start - end)		444 (50 - 493)529 (75 - 603)
definitionCHROMAT_FILE: MSMg01no426_g19.b1 PHD_FILE: MSMg01no426_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:57 2005CHROMAT_FILE: MSMg01no426_g19.g1 PHD_FILE: MSMg01no426_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGGT
GTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGAACATAGGGGTGGTGGGTTCATTTCTGGAACTTCAATTCCATTCCC
TTGGCTACTTGGCGGGCCCCAAACAAGAACATGGCGGTTTTTATTCCAAT
GGCCCTTGAAAAAAGTTTTTGGCCGGGATGGGGAATCCCCCCAAAAATTT
TTTTTTTTTTTAAAAAATTTTTTGTTACCCAGGGTTTTTTTTTTTCTCAA
AAAATTTTTAAAT

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGACTTACATATATTGAGTAAAT
GTTATACCAGTGATTGCTTGTTCATAGTGTTATAGCATTTTGTGGTATTG
GGATTGAAATAAGTATTTTCCATATAATAGACAAATCTTTACCTAGTAAG
GTGTGGACATAGCCCTCATGGCAAGCTGGGAGTAGCTAATACTGGTTTTT
TACCCTTCTTCTTCTTAAACATTTATGTGGATATGAGTGTGAAAACTAAA
AGGACCTAGATGGATTTACATTTTTTACTCATGTTTAATATAGTAATCCT
ACTTTGTTATCATGAGCCTGGGTCCTTTTTAGAATATACTCTTACTTTCG
GATGCATTCGTTTTAGTTGTATTTTACAATGAATTTACAAAATATTTTTT
GTTGGATTTGGATTATTATTGGCACTTCAATAATTTTAAGAAATACTGTG
AGAAGTGACTTATCACTCCTTAATATAAACATGGTTTCTAAAATCATGTA
CCATAGAAAATAAGAGAAACATATTTCTATATAATTGAAAATGTATCTAT
AATTGAAAGTTGTAAATACTAATTCACATATCATATGGACTAATTTCAAA
GTGTAAAATATTATTTGTGTAACTATTAACACCCATAGATTTTTTTCACA
GGATTATTAAAGNTATTGGATGCATTTTCAGTCCGAAGGTCTAAACCCAT
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_g19.g1 MSMg01no426_g19.g1 CHROMAT_FILE:
MSMg01no426_g19.g1 PHD_FILE: MSMg01no426_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:57 2005
         (529 letters)



>mm_chr7_110667094_110668022
          Length = 929

 Score =  878 bits (454), Expect = 0.0
 Identities = 511/530 (96%), Gaps = 2/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagacttacatatattgagtaaatgttataccagtgattgcttgttcatagtgttata 60
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagtcttacatttattgagtaaatgttataccagtgattgcttgttcatagtgttata 260

                                                                       
Query: 61  gcattttgtggtattgggattgaaataagtattttccatataatagacaaa-tctttacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 261 gcattttgtggtattgggattgaaataagtattttccatataatagacaaaat-tttacc 319

                                                                       
Query: 120 tagtaaggtgtggacatagccctcatggcaagctgggagtagctaatactggttttttac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 320 tagtaaggtgtggacatagccctcatggcaagctgggagtagctaatactgttttttttc 379

                                                                       
Query: 180 ccttcttcttcttaaacatttatgtggatatgagtgtgaaaactaaaaggacctagatgg 239
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| 
Sbjct: 380 ccttcttcttcttaaacatttatgtggaaatgagtatgaaaactaaaaggacctagatga 439

                                                                       
Query: 240 atttacattttttactcatgtttaatatagtaatcctactttgttatcatgagcctgggt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttacattttttactcatgtttaatatagtaatcctactttgttatcatgagcctgggt 499

                                                                       
Query: 300 cctttttagaatatactcttactttcggatgcattcgttttagttgtattttacaatgaa 359
           ||||||||| |||||||||||||||| ||||||||| ||| | ||||||||||| |||||
Sbjct: 500 cctttttagtatatactcttactttcagatgcattcatttaacttgtattttacgatgaa 559

                                                                       
Query: 360 tttacaaaatattttttgttggatttggattattattggcacttcaataattttaagaaa 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 560 tttacaaaatattttgtgttggatttggattattattggcacttcaataattttaagaag 619

                                                                       
Query: 420 tactgtgagaagtgacttatcactccttaatataaacatggtttctaaaatcatgtacca 479
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 620 tactgtgagaagtgacttatcattccttaatataaacatggtttctaaaagcatgtacca 679

                                                             
Query: 480 tagaaaataagagaaacatatttctatataattgaaaatgtatctataat 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagaaaataagagaaacatatttctatataattgaaaatgtatctataat 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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