Query= MSMg01no426_k09.b1 MSMg01no426_k09.b1 CHROMAT_FILE:
MSMg01no426_k09.b1 PHD_FILE: MSMg01no426_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:16 2005
(287 letters)
>mm_chr7_65809369_65810055
Length = 687
Score = 460 bits (238), Expect = e-134
Identities = 266/278 (95%), Gaps = 6/278 (2%)
Strand = Plus / Minus
Query: 4 ggaattctttgaatatctcccatgccacaacttttcacttttgggaatagatgtgtatgc 63
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggaattctttgaatattttctatgccacaacttttcacttttgggaatagatgtgtatgc 308
Query: 64 atctgttctatgtttgttcatggttcagtgaggctctgctagttttgcctaaaattttca 123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atctgttctatgtttgttcacggttcagtgaggctctgctagttttgcctaaaattttca 248
Query: 124 ttgcgatttagctaggataactcatgctgaattgccttcaattactctctctctctctct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgcgatttagctaggataactcatgctgaattgccttcaattactctctctctctctct 188
Query: 184 ctctctctctctctctctctctctctctctctctctctctctctcttgttttcaagacag 243
|||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||
Sbjct: 187 ctctctctctctctctctctctgtctgtct-t-----tctctctcttgttttcaagacag 134
Query: 244 ggtttctctgtgtagccctggctgtcctggaactcact 281
||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggtttctctgtgtagccctggctgtcctggaactcact 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no426_k09.g1 MSMg01no426_k09.g1 CHROMAT_FILE:
MSMg01no426_k09.g1 PHD_FILE: MSMg01no426_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:16 2005
(489 letters)
>mm_chr7_65615059_65615947
Length = 889
Score = 928 bits (480), Expect = 0.0
Identities = 489/496 (98%), Gaps = 7/496 (1%)
Strand = Plus / Plus
Query: 1 agatggtggcatcagatcctatggaattggagttacagatagttgggagccatcatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agatggtggcatcagatcctatggaattggagttacagatagttgggagccatcatgatg 253
Query: 61 aattgaattataatttactccaaatttattaaaaatattttcagggctgaagatatagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aattgaattataatttactccaaatttattaaaaatattttcagggctgaagatatagct 313
Query: 121 aaaacaggtcctctaaagagcaaccagtgctcttaaccact-------ctctccagaacc 173
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 aaaacaggtcctctaaagagcaaccagtgctcttaaccactgggtcatctctccagaacc 373
Query: 174 taaaaacaattatttttttacaaaagatttttctttgacaaccatgtctctgatacacaa 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taaaaacaattatttttttacaaaagatttttctttgacaaccatgtctctgatacacaa 433
Query: 234 actgtagttgaccaatcctcactgaatagtaagatttgagaactctactccaagtctcat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 actgtagttgaccaatcctcactgaatagtaagatttgagaactctactccaagtctcat 493
Query: 294 tatttctcctatattaaggctatttgctttaggttttcttctttgtaactgaaaataact 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatttctcctatattaaggctatttgctttaggttttcttctttgtaactgaaaataact 553
Query: 354 tcatgcaaataatgttataagtcaatgttcttctagattagtacttgctcaatctatgag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcatgcaaataatgttataagtcaatgttcttctagattagtacttgctcaatctatgag 613
Query: 414 gaagtagggtgatacagggtttcatacactccaggatagtcttggactccttatggccca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaagtagggtgatacagggtttcatacactccaggatagtcttggactccttatggccca 673
Query: 474 tgataaattgaacttt 489
||||||||||||||||
Sbjct: 674 tgataaattgaacttt 689
Score = 97.4 bits (50), Expect = 2e-24
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 66 aattataatttactccaaatttattaaaaatattttcagggctgaagatatagctaaa 123
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 866 aattataatttactctaaatttattaaaaatattttcagggctgaagatatggctaaa 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
