BAC Information

Click to search

BAC

Clone NameMSMg01-426M01
Chromosome7 (Build37)
Map Location 107,521,058 - 107,521,544
singlet/doubletsinglet
Overlap geneAU020772
Upstream geneGdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1
Downstream geneUcp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M01.T7 (MSMg01no426_m01.b1)MSMg01-426M01.TJ (MSMg01no426_m01.g1)
ACCAG520117AG520118
length858776
length of high quality
(start - end)
77 (40 - 116)494 (70 - 563)
definitionCHROMAT_FILE: MSMg01no426_m01.b1 PHD_FILE: MSMg01no426_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005CHROMAT_FILE: MSMg01no426_m01.g1 PHD_FILE: MSMg01no426_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
AGTTGTTCTCCCACCCCCACCCCCCCAACTACTAGCCTTAGTGGTGTTTT
TAGTTTTCTGGTTTTGTTCTGTTTCGAGGTAACAGTCTTGACATGGAACC
TTGGCTGGCCTGGACTGGCAAAATGCTTCTGTGTTTGCAGACACATACTT
GCCCCAAGAGACTGGTCAGGGAATAAGAGCCACTGCGCGCCTTGCACAAG
GCGCTAGCTCAGTAACGAGCTATTCTACATGACGACACAGATGCTCAGAA
CCGAGCACACCAGAGTCACCTGTATTATGTTCTCAGAGAAGCAACCCAGC
ATCAACATCTGAGAAATGATAAGATTCGTAGGCTGTGTATTTCGAAACGT
CGACATATAGTACGCGCGACGCAATTTGGCCATTTTGTTAACTGTTGCAT
TACCGAGCCCTCTGGTCTTCCCTCTTCTAGTACCACTGTAATTTACGTTA
TTTACCTTATTTTTCCTTTCTTTCCTGTCTCATGATACTCCACCCTTTAA
TTTTCCCTTCTTTCCTCATATTCCTCTTTTTATATTTTCAATCTTGCTTT
CTATCAATGTCTTAACAAATAATCCTTTTCATACTTTTTTACTTAAATAT
GACATTTCTCTCTTTTTCTTCTCTTCATATTTTTCTCTTTATCTACACCT
CTTATTTTTATCTTATTCCTCTCTCCCTCCTGTATTACATCTCCTTTTAC
TAACTCTCATCTTTTATCACCTCCCCTGTGTACTATTATCACTCCCGAAC
TTACTTTATCCTTCCCCCGCCTCCTTCTTTTCTTTCTCTCTTTTTCACCC
CTCCCTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAAGGAGACTTCCACCCGCTCCGGTTAAACA
AAACAAAACAAAAGAGGACGGAAGAGAGACTAACTAGGGAACCAGAAAGT
TAAGAGAGATTTTTTTTTTTAAAGAATGGAAAGGACGTAGCGCCTGTGGG
TCGATAAATGAGGCAAGTGAGGATTAGTAGATACGGATAGGAGAACAACA
AAATTAAACGTGCTCTTTTTACGACAGGGATACACGTATGTGTGTTAGAG
GTATTCGGAGTAGGGGGAAGGGACATAACTCTGTCCGGAAAAACCTTAGA
TGGTGAAAGGGTGTGTGATAGAGGACATCGTGAAACCTGTAACCCAAGCT
TACTCAAAAAGCAAATAAAACCACACACACACACATATATATATATATAT
ACACCCTTCTACTTCTCTGACTTTTTCCTTGGGAAGCGATTGCGCTTCAT
AAGAATATACTGAGATCTCATCAGGAATCAATACAAGGAGTTTTTTCAAC
TAAAACAGTTTGTGTCCTGTAGCATGAAGAAAAAGATCTACCATAAAGCG
CAGGGATAATTCGTTGAATGGAAACATATGTGCATATATGGACTGCTCCT
CACTTAGAATGACCTGAGATCCACTTAAATCCTCTTAATTATCCAGCTCC
TATAAGGGGGGCCTATGAATCCCAGGTGGGCCTGTAATTTGATCCGCCTG
CAAAAAAATTCTTGTTTTGTTGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m01.g1 MSMg01no426_m01.g1 CHROMAT_FILE:
MSMg01no426_m01.g1 PHD_FILE: MSMg01no426_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:24 2005
         (494 letters)



>mm_chr7_107520858_107521758
          Length = 901

 Score =  828 bits (428), Expect = 0.0
 Identities = 475/502 (94%), Gaps = 23/502 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggagacttccacccgctccggtt-----aaacaaaacaaaacaaaagaggacggaag 55
           ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||
Sbjct: 201 taaggagacttccacccgctccggttaaacaaaacaaaacaaaacaaaagaggacggaag 260

                                                                       
Query: 56  agagactaactagggaaccagaaagttaagagaga---tttttttttttaaagaatggaa 112
           ||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||
Sbjct: 261 agagactaactagggaaccagaaagttaagaga-attttttttttttttaaagaatggaa 319

                                                                       
Query: 113 aggacgtagcgcctgtgggtcgataaatgaggcaagtgaggattagtagatacggatagg 172
           |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 aggaagtagcgcctgagggtcgataaatgaggcaagtgaggattaatagatacggatagg 379

                                                                       
Query: 173 agaacaacaaaattaaacgtgctctttttacgacagggatacacgtatgtgtgttagagg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaacaacaaaattaaacgtgctctttttacgacagggatacacgtatgtgtgttagagg 439

                                                                       
Query: 233 tattcggagtagggggaagggacataactctgtccggaaaaaccttagatggtgaaaggg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattcggagtagggggaagggacataactctgtccggaaaaaccttagatggtgaaaggg 499

                                                                       
Query: 293 tgtgtgatagaggacatcgtgaaacctgtaacccaagcttactcaaaaagcaaataaaac 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgtgatagaggacatcgtgaaacctgtaacccaagcttactcaaaaagcaaataaaac 559

                                                                       
Query: 353 cacacacacacacatatatatatatatatacacccttctacttctctgactttttccttg 412
           |||           | |||||||||||||||  |||||||||||||||| ||||||||||
Sbjct: 560 cac-----------t-tatatatatatatac--ccttctacttctctgattttttccttg 605

                                                                       
Query: 413 ggaagcgattgcgcttcataagaatatactgagatctcatcaggaatcaatacaaggagt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaagcgattgcgcttcataagaatatactgagatctcatcaggaatcaatacaaggagt 665

                                 
Query: 473 tttttcaactaaaacagtttgt 494
           ||||||||||||||||||||||
Sbjct: 666 tttttcaactaaaacagtttgt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 901
Length adjustment: 10
Effective length of query: 484
Effective length of database: 891
Effective search space:   431244
Effective search space used:   431244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)