BAC Information

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BAC

Clone NameMSMg01-427B09
Chromosome7 (Build37)
Map Location 84,245,111 - 84,245,466
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427B09.T7 (MSMg01no427_b09.b1)MSMg01-427B09.TJ (MSMg01no427_b09.g1)
ACCAG520370AG520371
length745769
length of high quality
(start - end)
---356 (179 - 534)
definitionCHROMAT_FILE: MSMg01no427_b09.b1 PHD_FILE: MSMg01no427_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:51 2005CHROMAT_FILE: MSMg01no427_b09.g1 PHD_FILE: MSMg01no427_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCTCAATTTGTCTTTCCTTTATTGCTTCTATTTCCAT
TTTCAGGTCTTGAACAGTTTTATTTCTTTATTTTCCCTGATTAATTGCAT
TTTCCTGTATATCTTTCATGGATTTAATTGTTTTCTCTTTACCTGACGCT
ATCTAATTTATAAGATTAGATTTAACATCTCTTCCATGAGATTCAATTAA
AAAATACTATCCACGGCTTACTTCAATCTGATAGATGCGATCTGACAGTG
ACAGAAAGCCCTGAATCTTATAGACTGTCCTCTTCTACTACTATCAAGTT
ATCAAAAACTTCCTGCTATCTATTCTCCATATTTAAATACGAAATCAGAT
CATTTACATTTCCAATGGTAAGCCAAGAATCACCCATACACATCCACCCA
CTCCACCTATACCTGATATCTTGCCCCTATATGCTCTATTAGTACCAGAG
CCAGAACCTTATTAGACTACCTGAATGTCTCTAGAGACATCACGTCCCTG
AATAGATGCCAGAACAACTAAACTATTTAAACAACCCTATAATCGCTTAT
GCACTGGAAGCACTACTAAAAAATCTCCCCACCGAAAGGCCCCTGACCAG
ATTGTTTTTTGGGCACAAATCCATTTTAATTTCCAGAAAAGCCTAGTCCA
AACCTCTTTTTTTTTTTCCCAAAATAAAAACCCAAAGTCTATTCG
NNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGTCTGCCAGAATA
GCAACACTAAATCCTTTTATCTGATAGCTGAGAGCCTGAGCGTAAACAGA
GAATTTGGAAGACAGATCCCAACATAACAAAATAGTCTTTAAATAGATCT
ACTGATTTTTTTTTCTTTCTTTTCTATTTCCATGGAGGTTCTCAAACATC
TAGCCCATCTTGCAGATTTTGGACTTCTATCCATCTTTGCTTTCTCTACC
ATAACTGTAAACAGCTTGATACAATTTGAGCTATACTGTTTGTAGCTGTG
AAGGAAGAAGCAGAATAGAATACAAAATAAAATAGACTGTGTAGTAAAAC
AGAACACAAATATGTGCCCATGGCAAGGGAAACAGACTCCTGTGAAATTG
CCAATTAACTTAGTTGTAGTAAATGATCTTGTAAAGAAATGTCCCTGACT
AGTGCTTGTTACTGTTGCAGTTTCAAAAAATTAAGAAATGAATTCTCTAA
AGAATTCCCCCACCACTTTTAATTCTGTGTGGTTGCCAAGTAAAAAACAA
GAGAGAAATTTAGTTGCCCTAATGTGGGGGCAGAGAGGGGTTTTTAGGGA
GGTTACACATGGGGGAATTCCCTTTGCTGGGATTGGTAATCCCTTTTAGA
ATTTGGATGTTCCAACAGTCCCTATCCTATTCTTTTGCGGGGTGCGCCTT
ATCTCTACAATATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_b09.g1 MSMg01no427_b09.g1 CHROMAT_FILE:
MSMg01no427_b09.g1 PHD_FILE: MSMg01no427_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:51 2005
         (356 letters)



>mm_chr7_84244911_84245666
          Length = 756

 Score =  665 bits (344), Expect = 0.0
 Identities = 353/356 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatagtctttaaatagatctactgatttttttttctttcttttctatttccatggagg 60
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aaaatagtctttaaatagctctactgatttttttttctttcttttctatttccatgtagg 260

                                                                       
Query: 61  ttctcaaacatctagcccatcttgcagattttggacttctatccatctttgctttctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcaaacatctagcccatcttgcagattttggacttctatccatctttgctttctcta 320

                                                                       
Query: 121 ccataactgtaaacagcttgatacaatttgagctatactgtttgtagctgtgaaggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccataactgtaaacagcttgatacaatttgagctatactgtttgtagctgtgaaggaaga 380

                                                                       
Query: 181 agcagaatagaatacaaaataaaatagactgtgtagtaaaacagaacacaaatatgtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagaatagaatacaaaataaaatagactgtgtagtaaaacagaacacaaatatgtgcc 440

                                                                       
Query: 241 catggcaagggaaacagactcctgtgaaattgccaattaacttagttgtagtaaatgatc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 catggcaagggaaacagactcctgtgaaattgccaattaacttagttgcagtaaatgatc 500

                                                                   
Query: 301 ttgtaaagaaatgtccctgactagtgcttgttactgttgcagtttcaaaaaattaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaaagaaatgtccctgactagtgcttgttactgttgcagtttcaaaaaattaa 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)