BAC Information

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BAC

Clone NameMSMg01-427G07
Chromosome7 (Build37)
Map Location 95,348,730 - 95,349,217
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621477, Nox4, Tyr, Grm5
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562, Tmem135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427G07.T7 (MSMg01no427_g07.b1)MSMg01-427G07.TJ (MSMg01no427_g07.g1)
ACCAG520605AG520606
length761766
length of high quality
(start - end)
275 (52 - 326)488 (80 - 567)
definitionCHROMAT_FILE: MSMg01no427_g07.b1 PHD_FILE: MSMg01no427_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:15 2005CHROMAT_FILE: MSMg01no427_g07.g1 PHD_FILE: MSMg01no427_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATATAATTTCCGTCTTTCTATGCCTCTCATAGTTTCCTT
TGTGTGTATGTTGGTGTTTCAAATGATTTTTATTAGATATTTTCTTTATT
TACATTTCAAATGTTATCCACTTTCCTAGATTCCCTTCTGAAAATCCCCT
ATGCCCTGCCGCCGCCCCCCTTCCTCCCTGCTCACCAACCTAACCACTCC
CACTTCCTGACCCAGGCATTCCTCTATTCTGGGGCATAGAACCTTCACAG
GACCAAGGGCCTCTCCTCCCATTGATTATCTATCTAAGCCATCCTTTGCT
ACATATGGAGCTAGAGCCATGAGTCCCACCATGTGTTTTCTTTGATTGGT
GGTTTAGTCCCAGGGACCTCTGGGTTAGTTCATATTGTTGTTCCTCCTAT
GGAGCTGAAAACCCCTCAGTTCCTTAGGTCTTTTCTCTAGCTCCTTCATT
GGTAACCCTGGGCTCTGTCCAATGGATGGCTGTGACCATCCACTTCTGTA
TTTGTCAGGCACTGGCGGAGCCTCACAGGAGACAGCTTTATCAGGCCCCT
TGTCAGCAAGATCTTGTTGGCATCTGCAATAGTGTCTGGCCTTTGGTGGT
ATTTTATTTTTTTTTCTATTTTTTTTTCTAACTACCTTATTTACTCATTA
ACTCTTTATTTTCTCATCTTCTTCTTCTTTATATCCTTTATTTCACTTTC
TCTTTTATCTT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGGCACAAAAACTAAAA
ATGACTAAAGCCCACAAATTAAAAACAAAACAAAATCCTGCCTCTCCCTT
TTCCCAGACAATGTCTCCCTTCAGCCTTTATGACTGCATATATGACTCAG
TGTTTGCTCATCTTCTACAGTCTGCTCTTGAGACCTTCAAAGTCTTCTGA
ACTCTTTCTCAACTCTCTGGTTTTTCCCATAAGCTCACAACATGCCTCGG
GGTCAGAAGGCAGTAATTTCTAACCTCAAAAATACCTCGAACTCGAGAAC
TTGCAGGTGTTAGAACTAATCCTAGCAGTGAAAACCTTCCGGGTTAACAG
ATCTTGATTTTTCCATTCCCTTCTAGACTCTTCAGTTTGTAGATCTTGTA
GGCACCATTTTCAAAGTTTTTTTTTTCTTCCTGCTACTTTGTTATTTTGT
TTTATTTTTTAATGACATGCATTTGTGCATATTTTGAGACGTGTGATATT
TTGGTATACAGATACACCATGTGATGATCTTATCTGTGGAATTACCGTAT
CTATCTCTTTGAACATTGGTTGCTCAGNTTTGTTCCTGTTTTGCAACTGT
GATCCTGCTTTTCTACTCCTCTAGGGCATCCCCCCCAATTGCATTCCTCT
AAATTCTCCTGGAAAATTTTTGATTTAACCTTGAAGAACTACGAAAAAAT
AATCCAACCCCGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_g07.g1 MSMg01no427_g07.g1 CHROMAT_FILE:
MSMg01no427_g07.g1 PHD_FILE: MSMg01no427_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:16 2005
         (488 letters)



>mm_chr7_95348530_95349417
          Length = 888

 Score =  905 bits (468), Expect = 0.0
 Identities = 483/488 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcaggcacaaaaactaaaaatgactaaagcccacaaattaaaaacaaaacaaaatcct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ctgcaggcacaaaaactaaaaatgactaaaacccacaaattaaaaacaaaacaaaatcct 260

                                                                       
Query: 61  gcctctcccttttcccagacaatgtctcccttcagcctttatgactgcatatatgactca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctctcccttttcccagacgatgtctcccttcagcctttatgactgcatatatgactca 320

                                                                       
Query: 121 gtgtttgctcatcttctacagtctgctcttgagaccttcaaagtcttctgaactctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtttgctcatcttctacagtctgctcttgagaccttcaaagtcttctgaactctttct 380

                                                                       
Query: 181 caactctctggtttttcccataagctcacaacatgcctcggggtcagaaggcagtaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactctctggtttttcccataagctcacaacatgcctcggggtcagaaggcagtaattt 440

                                                                       
Query: 241 ctaacctcaaaaatacctcgaactcgagaacttgcaggtgttagaactaatcctagcagt 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctaacctcaaaaatacctcgaactcgaggacttgcaggtgttagaactaatcctagcagt 500

                                                                       
Query: 301 gaaaaccttccgggttaacagatcttgatttttccattcccttctagactcttcagtttg 360
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaaccttctggattaacagatcttgatttttccattcccttctagactcttcagtttg 560

                                                                       
Query: 361 tagatcttgtaggcaccattttcaaagttttttttttcttcctgctactttgttattttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagatcttgtaggcaccattttcaaagttttttttttcttcctgctactttgttattttg 620

                                                                       
Query: 421 ttttattttttaatgacatgcatttgtgcatattttgagacgtgtgatattttggtatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttattttttaatgacatgcatttgtgcatattttgagacgtgtgatattttggtatac 680

                   
Query: 481 agatacac 488
           ||||||||
Sbjct: 681 agatacac 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)