BAC Information

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BAC

Clone NameMSMg01-427O10
Chromosome7 (Build37)
Map Location 79,915,555 - 79,915,713
singlet/doubletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
Downstream geneLOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427O10.T7 (MSMg01no427_o10.b1)MSMg01-427O10.TJ (MSMg01no427_o10.g1)
ACCAG520991AG520992
length740742
length of high quality
(start - end)
68 (459 - 526)159 (334 - 492)
definitionCHROMAT_FILE: MSMg01no427_o10.b1 PHD_FILE: MSMg01no427_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:54 2005CHROMAT_FILE: MSMg01no427_o10.g1 PHD_FILE: MSMg01no427_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGAATTTACCGTGCAGCAGGGATAAGCCCATCCCGTCATAG
GGAGCAGCTGCTGCGCACCTTCATAAAAGATGCTAAGCTCCAAGAGGGAT
GAGCTGCTCTTACCCATGATAACCGTGAGTGGAGATGGAGAGCATGGGAG
ACCCCGACAGACCCGGAGCGCTACAGCCTGAACCTGCAGCACCGCGTAGT
CGCATCCGCATCCACGGTTTATTTCTACGCAGTACCATTTTCTAATACTT
TTATTTGAAATTATCCAATCGGTTTTTTTCCCTCTTAGAAAACCTGCGAA
GACAATTTCTGGCTTGGGCGATCTTGTGTTCCTCTGGCGACTACCGAAAG
CGGTAGAGGTCAGCCTCTTTGCTGCGCAGCTTCAGCAGGTTCCCCGGGAG
GAACATGAGATCCACGATGTACTCTTCGGGTGGGGGCAGGCTCCCGATCG
TGCCTTTCTGAGCCTCATTCACCAGCTTCACTTCGGTCCACCCTCGGCTG
TACTCAGCACGCACCATGCTGCAGCCTACCCCGATTTTATCAGTCAGTGC
CTGCATGAGGAATAATACACCCGCTGCTCAGGGTCATTTGCCCGCTGATG
TAGAGAGACTCTTATTTTGTGAGTTAAACACCGACATGCAACTATGCTTG
AATGTAAGCAACACAATGGTGAGTATTTATGTACCTTCTC
NCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTACAGCCAGTGCTACACA
TAAAAACCCTGTTTTGACAAACCGACTAAACCTGAAAAGAAAAAGACTTG
CTAGTACCTCTGTGAGTGTGAGTGCGAGTGAGAGTCTGTGCTGCAGTCTG
CGAGAAGTCACCCACTCCCCTCACTAACCCTGTGAAAACTCTGGATTTCT
GCATAAGTTCCATAGGTAGTACACCCAACGGGAAAGGCCAGCCTGCAATC
AGCATTCTTTCTGCTGGATGTGGATTTTTTTATTGCTCTCCTGCTGTACA
AATCATTGGTCTTTCCTGTACCTGTGATATCAATCCATCTTATAAAAGAG
GAGAGAGGGCAAATTACTGGTAGTTATCTTCTAAAGTGGGTTTATTATTC
ATTCTTAAAATCTTCACTTTTGACAGGGCCATCCATAAGTTTCAAGTACT
ATAGAGAGACTAAATAGCCTTTAAATACCTCTCCCTTATCTCAGAAAGTA
TAATACAAATGAGACATTTGCTCACTGCCTTATAGGCAGCCCCTCTTCCT
CCTTGTGTAAGAATTAATTGCACACCTCCAGGGGTTTTACTGAACGTGGA
CCAGCGAATTTCCCTTCCTTTCTAATCCTATGTGAAATTTTTGCTCTTTA
TTACCCCAGTCTCCATCTACGAACTGTACCTGCTTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_o10.g1 MSMg01no427_o10.g1 CHROMAT_FILE:
MSMg01no427_o10.g1 PHD_FILE: MSMg01no427_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:54 2005
         (159 letters)



>mm_chr7_79915355_79915913
          Length = 559

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctctcctgctgtacaaatcattggtctttcctgtacctgtgatatcaatccatcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tgctctcctgctgtacaaatcattggtctttcctgtacctgtgatatcaatccatcttag 260

                                                                       
Query: 61  aaaagaggagagagggcaaattactggtagttatcttctaaagtgggtttattattcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaggagagagggcaaattactggtagttatcttctaaagtgggtttattattcatt 320

                                                  
Query: 121 cttaaaatcttcacttttgacagggccatccataagttt 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaaaatcttcacttttgacagggccatccataagttt 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)