BAC Information

Click to search

BAC

Clone NameMSMg01-428E17
Chromosome7 (Build37)
Map Location 93,759,603 - 93,760,001
singlet/doubletsinglet
Overlap genenone
Upstream geneEG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295
Downstream geneOlfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428E17.T7 (MSMg01no428_e17.b1)MSMg01-428E17.TJ (MSMg01no428_e17.g1)
ACCAG521293AG521294
length755754
length of high quality
(start - end)
524 (72 - 595)398 (81 - 478)
definitionCHROMAT_FILE: MSMg01no428_e17.b1 PHD_FILE: MSMg01no428_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:26 2005CHROMAT_FILE: MSMg01no428_e17.g1 PHD_FILE: MSMg01no428_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAATATTGCCGCTCCACTAAAATTAGTGATGAGACAAGGGTTC
TGAGTCTTTTGATATCTCTTCAACTTAGTACTTGTATATCTAGCAGAGCA
GTATGATAAAAGAAGATGAGGATGATACAAATTAGAATGGAATAAGTCAA
AGTATAGCTATTCACAAATGATATCATAGTATACATAAAGGACTCCACAA
ATTCGACCAGAGAAGTAACACAGCAGAAAAACATATTCAGCAAAGAAGAT
GGATAGAAAATTACCTCATATTTTGAGTCACATTTTCAATAAACCATTTG
GGCAGAGAAGAAATTATGGCAACAATACCATTTATGACACACACACACAC
AATATAAAATAAAGCACTAACCAAGCAAGAGAAAGACTTATATAACAAGA
ACTTAAAGTCTCTGAAGAAAGAAAGTGAACAAAATATCAGAAGATGGGAA
CATCTCCCATGCTCATCTTTTCCTATCCACAAAGGACTTTTGAAAAGTAT
GTCCATATGGGAGATATAAGCAATTTTATTCATTTTGAGAAAACATAGCC
TCACCTGTCATGTTGGAAATTTCATTTTCTGGGTAGGGGTAACAATCCAA
ACACGTTTACAGAGTTTCCCTCCCGATAAGATTTTCTGAGTCCTGCCCCG
CTATGCCCACTACATATGGAGGCTACAGCCTGATGAAGATCACACACTTT
ATTAC
TCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAAATCCCAGTTTTAG
AAAAAAAAAACTGTATATTTGAAAAGAGCTGTTCCATGGTACCCCTACCA
AGACAGCAGCAGATATAGTTAAAGTAGCACATCCTGAACCTCAGAAAACC
AGCTTCTGAGTGTTGGAGGAGGGTCTTATGCATAGTTTATTCAGATGCTT
ATTGCAATGTATTGAAGCCTAATTACAGTCCAGACAGTGGCATTGACATG
GATATTGAAGTCTCTCCAGACTGGGTATAGGAGATAGAAAAGCTGGACTT
CCAATCCCACATATGTAGCAGGGCTGCCTTGTGACCTCAGTGGGAGAGGA
TGTGCCTAATTGTGCAAAGACTTGATACACCAGTGTAGCAGGATAAACAT
GGGGCTTTACCCTCTCAGAGATAAAGTGGAGAGTGGATGAGTAGAAGGAC
TTCTCTAACGCCGGTCAGAGCGGAAGATAATGCCGCCACCTTTTGGTTTG
CTTTTATTGTTCTCCACTCCTTTTTTTGTTTCGACAGCCCATCACTACTT
TTTCTTTACCATTTATCCTTTTTTTTCCCCTTATCCCTATCTCTTTTTCC
CCCTTTCTTGTTTTTTTTTTTTTTTCTGTTCCTCCTACCACCCCCCCCCT
CTGTTCTTCTTTTTTCTTCCTTCCCCCTTTATTACGCCTTTTTTTTCCCT
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_e17.g1 MSMg01no428_e17.g1 CHROMAT_FILE:
MSMg01no428_e17.g1 PHD_FILE: MSMg01no428_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:26 2005
         (398 letters)



>mm_chr7_93759403_93760203
          Length = 801

 Score =  748 bits (387), Expect = 0.0
 Identities = 395/399 (98%), Gaps = 3/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaaaatcccagttttagaaaaaaaaaa---ctgtatatttgaaaagagctgttccat 57
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 201 cttaaaaatcccagttttagaaaaaaaaaaaaactgtatatttgaaaagagctgttccat 260

                                                                       
Query: 58  ggtacccctaccaagacagcagcagatatagttaaagtagcacatcctgaacctcagaaa 117
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ggtacccctaccaagacagcagcagatatagttaaggtagcacatcctgaacctcagaaa 320

                                                                       
Query: 118 accagcttctgagtgttggaggagggtcttatgcatagtttattcagatgcttattgcaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagcttctgagtgttggaggagggtcttatgcatagtttattcagatgcttattgcaa 380

                                                                       
Query: 178 tgtattgaagcctaattacagtccagacagtggcattgacatggatattgaagtctctcc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtattgaagcctaattacagtccagacagtggcattgacatggatattgaagtctctcc 440

                                                                       
Query: 238 agactgggtataggagatagaaaagctggacttccaatcccacatatgtagcagggctgc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactgggtataggagatagaaaagctggacttccaatcccacatatgtagcagggctgc 500

                                                                       
Query: 298 cttgtgacctcagtgggagaggatgtgcctaattgtgcaaagacttgatacaccagtgta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgtgacctcagtgggagaggatgtgcctaattgtgcaaagacttgatacaccagtgta 560

                                                  
Query: 358 gcaggataaacatggggctttaccctctcagagataaag 396
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaggataaacatggggctttaccctctcagagataaag 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 801
Length adjustment: 9
Effective length of query: 389
Effective length of database: 792
Effective search space:   308088
Effective search space used:   308088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)