BAC Information

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BAC

Clone NameMSMg01-428N08
Chromosome7 (Build37)
Map Location 111,517,856 - 111,518,084
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik
Downstream geneEG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428N08.T7 (MSMg01no428_n08.b1)MSMg01-428N08.TJ (MSMg01no428_n08.g1)
ACCAG521706AG521707
length876771
length of high quality
(start - end)		39 (89 - 127)223 (328 - 550)
definitionCHROMAT_FILE: MSMg01no428_n08.b1 PHD_FILE: MSMg01no428_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:08 2005CHROMAT_FILE: MSMg01no428_n08.g1 PHD_FILE: MSMg01no428_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATTTGCNNCGCTNNTCNACTCCTATTTCAATAGATCCGNGNAANT
CATTCTTTTCATAACTGAGNANNACTCCATTGTGNANATGTACCACATTT
TCTGTATCCATTCCTCTGTTGAGGAACATCTGNNTTCTTTCCAGCTTCTG
ACTATTATAAATAANGCTGCTATGAANTTANTGGAANNAATGTGTTCTCT
NTTAACGGATNNGAANNNCTGTTTGTTTGNCCGCATAGAAAGAATTGAAG
AAGAGGGAGAGGAGGGGGGGAAGGAGGGGGGGGAAAGAGGAAGAGAGGGG
GAGGAGAGGAGGAAGAGGGGAGAGAGTGGTGAGAGAAGAGGAGGAGGAGA
GGGGAGAGGGAGGGAGGGAAGTTTTCTCTCCCCCCCCCCNNNCCCCCCTT
CCCCCTTNAATTTTTTNNTTTTTTNNTCCTTCCCNACCTTTTTTNTAATT
GTACTTCCTCNNTTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTNTNN
TTNTTTTTTTATTTTTTTTTTTTCNTTTTTTTTTTCCTTTCTTCCTNTNT
TTCTTCTCTTTTNNTATTTTTTTTTTTTTTCTCTTCCTTTTCCTTTTTTT
TCTTTTTTTTTTCTTTTTTTTTTCTTTCTNNTTTTNTTTTTCTCTTTTTT
CCTTTCCTTTTTTTTTTCCCCTTTTTTCTTTCTTTTTCCCCCNCCTTNNN
CCCNNNTTCCTTTTTTTTTTTTTCTTNTTCNTCCCCNCTTTTTTTCTTTC
TTCTTTTTTTTTCTTTTTTCCCTTTTTTTTTCTTTTTCTTTTTTCTTCTC
CTTCTTCTCTTTTTTTTTCCCCTTTTTTCTCTCCCCCCTTTTTCTTTTTC
TTCCCTTCCGCTGATATATAAGTAAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGACATAGTCTTTGGTCT
CCATTTGCTCCTCTCCCAGAGTTTGGGTCTCTCAGTTGGTGTCTGAAGAT
GTGAGAACAATTTTAGGGTGCAGAGTTTGGAGGAATTTATAAGAAAACAC
TGTCTTTGCTCTGGTGAGTTTAAGTTGAAACTGCGAAAGGGCTGGGAATA
AATAATGCTGGCCTCCTGCCGAATGTTGTGGGTTGAAGAGCAAGAGGGAG
GGGTAGCCTGAAGAGGATGTTTTTCTTGAACTGGAGAAGTCCTGTTTTTT
TTCCAGGTGAACTTCAGACTCTTCTTTCTCATCTTTAATTTTGAGTTACA
CCAAGAACCTCTTGCTTCAAGACAGGCACTTTCTCCTCCCTTAGGAGAAG
TTAAGCCAGAGTGGTGTTTGAAACAAGAGCTTAAGGTTTCTCTGTGTAGC
AGTATATTTACCCATGATTCTATGAACACATTCCTTTTGCTTCTGTCTCT
GTGATTGGAAGTCCTGATCTTTCTGCAGCTTCCTTCCATTTACTTGGACT
ATGAAACAGCCTCAATTCTGTTCTTCTGGCATATATACTAAGACAAAGGG
GGGTTCTATTTTTTTGTAATTCATCACGTAATTGCGCTAAGTTACTTAAG
GGTCCCCCCCAATAGGGAAACTTTTTCTGCGACTTGTTCTGTTTCCCCTA
TATCTTTACGGTTTTATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_n08.g1 MSMg01no428_n08.g1 CHROMAT_FILE:
MSMg01no428_n08.g1 PHD_FILE: MSMg01no428_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:08 2005
         (223 letters)



>mm_chr7_111517656_111518284
          Length = 629

 Score =  389 bits (201), Expect = e-113
 Identities = 220/229 (96%), Gaps = 6/229 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactggagaagtcctg--ttttttttccaggtgaacttcagactcttctttct----ca 54
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||    ||
Sbjct: 429 gaactggagaagtcctgttttttttttccaggtgaacttcagactcttctttctcatcca 370

                                                                       
Query: 55  tctttaattttgagttacaccaagaacctcttgcttcaagacaggcactttctcctccct 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctttaattttgagttacaccaagaacctcttgcttcaagacaggcactttctcctccct 310

                                                                       
Query: 115 taggagaagttaagccagagtggtgtttgaaacaagagcttaaggtttctctgtgtagca 174
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 309 taggagaagttaagccagaatggtgtttgaaacaagagcttaaggtttctctgtgtagta 250

                                                            
Query: 175 gtatatttacccatgattctatgaacacattccttttgcttctgtctct 223
           |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 gtatatttacccatgattctatgaacacattccttttgcttctggctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 629
Length adjustment: 9
Effective length of query: 214
Effective length of database: 620
Effective search space:   132680
Effective search space used:   132680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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