BAC Information

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BAC

Clone NameMSMg01-429H03
Chromosome7 (Build37)
Map Location 87,193,760 - 87,194,304
singlet/doubletsinglet
Overlap geneZfp710
Upstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik
Downstream geneIdh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429H03.T7 (MSMg01no429_h03.b1)MSMg01-429H03.TJ (MSMg01no429_h03.g1)
ACCAG522172AG522173
length752742
length of high quality
(start - end)
557 (37 - 593)354 (75 - 428)
definitionCHROMAT_FILE: MSMg01no429_h03.b1 PHD_FILE: MSMg01no429_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:56 2005CHROMAT_FILE: MSMg01no429_h03.g1 PHD_FILE: MSMg01no429_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTATTTGCACAGGAGCCGCGGAATTCAGTAACA
TATTAAGGAAGGCATCTACCACAACCCAGTGGGGCCAGAAGGAAGACTAG
TCAGTATCAGGAAAGCTTACTACAGTATGTATGGTATGCTAGTGAGCTAG
AGCTAGAGCAAAACCAGATTAACTCCAAACATGCTGGGGAAGAATTGACT
ACATTTCTACCTAAACAGTATGCCAGAAGAGAAACAGAAGTGTGGGTGCC
TTCTTAGCGTGACTCAGAGTACCTATGAAAGCTACTAGCCGTTACAAGTG
ACTAGAAACACTCAGACATCGGTGCTGAAATCGGCCAAGGAGACCTGTGT
CACCATTTCTGTTTAGCATCGCTCTTGAATCCAGTAAAACCAGCTTAGTT
GATATTACAGCTCAGGCTTGGGTTGATTTCTAAAGTTCAGAGCCAATCAA
AAGTCTCCAGAAAAGCCCAGAGCCTGGGTGTGTTGTGTTGCTCAGTGGTC
GAGCTCCTGCTGGGAGGATGNCGAGGGAGAACAAATTTGACTGTGGAAAA
AAAAAATTTGCAATCTCTGTATGCAGACTGTAAAAGAATGAGAGGCTGGT
AGTGATGGAGCAAAGATTTTTATCATAAATATATAAGCAGGTTGATATTT
TACTTCTATTAAAGAGCCTGTGTCGATTACATTTTTTTTGTTGCCCCCGA
AATTTTTGGCTTGATTGGCCGTCTGGTGCCCTGCGCCTTGAACCGCCCCC
CC
CTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCGTACACCAGGCTGGCCTTGAA
CTCACAGAGAACCTGCCTCTGCCTCTAGAGCACTGAGATTAAAGGTGTGT
GGCACCACCACCCAGCTGCTTTCATTCTTGTTTATTTTATGTGTATGAGT
GTTTTGCCTGCATTGATGTGTGCACCTCTTTTGTGCCAGGTGCCCATGGA
GGCCAGAGAGGGTATCGGGTCCCTGGGGACTGGAGCTACAGAAGGTCATG
ATCTGCCATGTGGGTGCTGTTAAACAGGCTGATCCTCTAGAAGAGCAGCC
CATATTCATACCTGCTAAACCATCTCTCCAGCCCTGGTATTGTCTGTCTG
TCTGTCTTTCTTTCTCTTTTTTTTTTTCATGACCACCTTATAAACTGACT
TTCCATTGGCCCCCCCTTCCTTTTCCACCTTTTTGAAATGACGTTATGGA
CCCCTAGCCCTCTTTCCTTTATGTACTCTAGGGCGTGCCCGAATTCTTAA
CCCTCCCGCCCACGTTTTTGTTACACCGCCCAGCTTCCCACTTTCTCTCA
CATGTCCCTTTTTCTCCATTTTTCCCCTTTCCCCCCCCCCTATCAAACCC
CTTACTCCCCCCCCCCTATCCCTCAAACCTTTTTTCCCTTTGCCCATACT
CTCCTCCTTTTTCTTTCCTCTTCCCCTTTCTCTTTATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_h03.b1 MSMg01no429_h03.b1 CHROMAT_FILE:
MSMg01no429_h03.b1 PHD_FILE: MSMg01no429_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:56 2005
         (557 letters)



>mm_chr7_87193559_87194517
          Length = 959

 Score =  917 bits (474), Expect = 0.0
 Identities = 531/559 (94%), Gaps = 17/559 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcagtaacatattaaggaaggcatctaccacaacccagtggggccagaaggaagac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcagtaacatattaaggaaggcatctaccacaacccagtggggccagaaggaagac 261

                                                                       
Query: 62  tagtcagtatcaggaaagcttactacagtatgtatggtatgctagtgagctagagctaga 121
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 tagtcagcatcaggaaagcttactacagtatgtatggtgtgctagtgagctagagctaga 321

                                                                       
Query: 122 gcaaaaccagattaactccaaacatgctggggaagaattgactacatttctacctaaaca 181
           ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 gcaaagccggattacctccaaacatgctggggaagaattgactacacttctacctaaaca 381

                                                                       
Query: 182 gtatgccagaagagaaacagaagtgtgggtgccttcttagcgtgactcagagtacctatg 241
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 382 gtatgccagaagagaaacagaagtgtgg-tgccttcttagcgtgactcagagtacctatg 440

                                                                       
Query: 242 aaagctactagcc---gttacaagtgactagaaacactcagacatcggtgctgaaatcgg 298
           |||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aaagctactagcccgtgttacaagtgactagaaacactcaggcatcggtgctgaaatcgg 500

                                                                       
Query: 299 ccaaggagacctgtgtcaccatttctgtttagcatcgctcttgaatccagtaaaaccagc 358
           ||||||||||||||||||||||||||||||||           |||||||||||||||||
Sbjct: 501 ccaaggagacctgtgtcaccatttctgtttag-----------aatccagtaaaaccagc 549

                                                                       
Query: 359 ttagttgatattacagctcaggcttgggttgatttctaaagttcagagccaatcaaaagt 418
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttagttgacattacagctcaggcttgggttgatttctaaagttcagagccaatcaaaagt 609

                                                                       
Query: 419 ctccagaaaagcccagagcctgggtgtgttgtgttgctcagtggtcgagctcctgctggg 478
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 caccagaaaagcccagagcctgggtgtgttgtgttgctcagtggtcgagctcctgctggg 669

                                                                       
Query: 479 aggatgncgagggagaacaaatttgactgtggaaaaaaaaaatttgcaatctctgtatgc 538
           ||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 670 aggatggggagggagaacaaatttgactgtggaaaaaaaa--tttgcaatctctgtatgc 727

                              
Query: 539 agactgtaaaagaatgaga 557
           |||||||||||||||||||
Sbjct: 728 agactgtaaaagaatgaga 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 959
Length adjustment: 10
Effective length of query: 547
Effective length of database: 949
Effective search space:   519103
Effective search space used:   519103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)