XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGGATATCTGTTTTCTTAAATCCACATTGGAAGCCCAAAGAAGCTGGC
TCCAATATTAGAGAATGAAGCAGCCAGCAGCAGCAGGGTAAAGGAACTTT
ACCAGTGAGAGTGAAAACCAGGCGGCAAGGAAGCAAAACCTGCCTTCCTC
CATGTCCTGTCACTTGACCCTACAGAAGGTGCTGCCCATATTTCGGGTGG
CACTACCCACCACAATTAACAGTCAAGACTGTCCCCCACAGACATGCCCA
CAGACCAACCTGATCTATATACATCCTCAGGAAGATTCGGTTCCCAGGTC
GTTCTAGACTGTGTTGACAGTTAAGACCAATAGGCAAGGTCTTTTTTCAA
GAATCATTTGTATTTGCCACCATCAACCCCCTTCCTGCCAGGCAAGCAAC
AGGCTGGGTATCACCTGAGAACACCAGCTCACGGGGCTTCTTCCTCTAGC
AAAAGATCCAAATTTGGCTCAGAGAAGTGAAGTTTTGAAAAGAGGAGGGA
GGAGGAAGCCTTGACAGAACAAGTCACCCTCGGTTCAAGAGCAGAGAGCC
CCCATCGCTCCTTATAAAACATTATGTATGGAGGCAGAGCCCGGCATAGC
GTGCGGCCCCAGATAAAAGGTCCCAAAGCTGTGCACTTCTCTTTGCAAGG
TACCCCCGTTTCCCGTTGAATGG

NNNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTCTAGGTAGAA
GAATTTGATCTACACCTGTATTTGCTTCCAGGATCATTTTAATAAAAAAT
ATGTTTTTTGATTTACAGGTCACTCCTTGTGGTTCATTTCTGGGCACCAT
GGGCTCCACAGTGTGTACAGATGAACGATGTCATGGCAGAGTTAGCTAAA
GAACACCCTCATGTTTCATTTGTGAAGGTATTATTCATTTTCAATCTTAT
ATCTTTTATTAATATCTGACTTACGAGATAGACTAGATTTTATAATGTAN
AGGAAGAAGCTGTGAAATCCCAGTACTTGAACTTTGTGTTGAATTCTGTT
ATATTTGCAGCAAGCTATTTTGACAGATCTTTTTGGTTGAATTTTTGGTT
GGGTTGGGGGGGCCCTTTCAACCCCGGCTCCTCCTTGCCTTTTCTTGCTT
GTTCCTTCAAACCCTTTTTGTAAACCCCCACCTTTTTTTTTTATTTATCA
ACCCTCCTGTCCTTTTTTTCCCTTTTTTTTGGCCCCCCCCCATTTTTCCC
TTCCCCCCCCCCCCCCTTTTTCTCTTTATCCCTGCCCCTCTTCTCTCTCC
CCTCTTTATCCCCTCCTCCCCTTCCCCCCCCTATTCCCCTTACCCTCTTT
CCTTCCCCCCCCCCTTG

Query= MSMg01no429_k20.b1 MSMg01no429_k20.b1 CHROMAT_FILE:
MSMg01no429_k20.b1 PHD_FILE: MSMg01no429_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
         (499 letters)



>mm_chr7_144803791_144804689
          Length = 899

 Score =  775 bits (401), Expect = 0.0
 Identities = 419/425 (98%)
 Strand = Plus / Minus

                                                                       
Query: 75  tgaagcagccagcagcagcagggtaaaggaactttaccagtgagagtgaaaaccaggcgg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tgaagcagccagcagcagcagggtaaaggaactttaccagtgagagtgaaaaccaggcgg 840

                                                                       
Query: 135 caaggaagcaaaacctgccttcctccatgtcctgtcacttgaccctacagaaggtgctgc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 caaggaagcaaaacctgccttcctccatgtcctgtcacttgaccctacagaaggtgctgc 780

                                                                       
Query: 195 ccatatttcgggtggcactacccaccacaattaacagtcaagactgtcccccacagacat 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ccatatttcgggtggcactacccaccacaattaacagtcaagactgtcccccacagacat 720

                                                                       
Query: 255 gcccacagaccaacctgatctatatacatcctcaggaagattcggttcccaggtcgttct 314
           |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gcccacaggccaacctgaaatatatacatcctcaggaagattcggttcccaggtcgttct 660

                                                                       
Query: 315 agactgtgttgacagttaagaccaataggcaaggtcttttttcaagaatcatttgtattt 374
           || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aggctgtgtcgaaagttaagaccaataggcaaggtcttttttcaagaatcatttgtattt 600

                                                                       
Query: 375 gccaccatcaacccccttcctgccaggcaagcaacaggctgggtatcacctgagaacacc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gccaccatcaacccccttcctgccaggcaagcaacaggctgggtatcacctgagaacacc 540

                                                                       
Query: 435 agctcacggggcttcttcctctagcaaaagatccaaatttggctcagagaagtgaagttt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agctcacggggcttcttcctctagcaaaagatccaaatttggctcagagaagtgaagttt 480

                
Query: 495 tgaaa 499
           |||||
Sbjct: 479 tgaaa 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_k20.g1 MSMg01no429_k20.g1 CHROMAT_FILE:
MSMg01no429_k20.g1 PHD_FILE: MSMg01no429_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
         (269 letters)



>mm_chr7_144636376_144637044
          Length = 669

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttttctaggtagaagaatttgatctacacctgtatttgcttccaggatcattttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttttctaggtagaagaatttgatctacacctgtatttgcttccaggatcattttaa 260

                                                                       
Query: 61  taaaaaatatgttttttgatttacaggtcactccttgtggttcatttctgggcaccatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaaatatgttttttgatttacaggtcactccttgtggttcatttctgggcaccatgg 320

                                                                       
Query: 121 gctccacagtgtgtacagatgaacgatgtcatggcagagttagctaaagaacaccctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctccacagtgtgtacagatgaacgatgtcatggcagagttagctaaagaacaccctcat 380

                                                                       
Query: 181 gtttcatttgtgaaggtattattcattttcaatcttatatcttttattaatatctgactt 240
           ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 381 gtttcatttgtgaaggtattattcattttcagtcttatgtcttttattaatatctgactt 440

                                      
Query: 241 acgagatagactagattttataatgta 267
           | ||||||||| |||||||||||||||
Sbjct: 441 atgagatagacaagattttataatgta 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)