BAC Information

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BAC

Clone NameMSMg01-430E24
Chromosome7 (Build37)
Map Location 82,998,278 - 82,998,526
singlet/doubletsinglet
Overlap geneKlhl25
Upstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
Downstream geneLOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430E24.T7 (MSMg01no430_e24.b1)MSMg01-430E24.TJ (MSMg01no430_e24.g1)
ACCAG522836AG522837
length778791
length of high quality
(start - end)
375 (53 - 427)249 (82 - 330)
definitionCHROMAT_FILE: MSMg01no430_e24.b1 PHD_FILE: MSMg01no430_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:06 2005CHROMAT_FILE: MSMg01no430_e24.g1 PHD_FILE: MSMg01no430_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTAGCGGTCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTTCCTCTGAGTCCCATTTTTTAATGGGGTTAT
TTGATTTTCTGGAGTCCACCTAATTGAGTTGTTATGTATATTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTGGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCAA
TTTTATGAGATCCCATTTGTTGATTCTCGATCTTACAGGACAAGCCATTG
CTGTTCTATTCAAGAATTTTTCCCCTGTTTTTCTTATCTTCGAGGCTTTT
CCCTACAATCTCTTCTATAAGTTTCAGTGTCTCTGATTTTATGTGGACTT
CCTTAATCCACTTATATTTGACCTTAGTACAAGGAGATAGGAATGGATTG
ATTCACATTCTTCTACATGATAACCGCGAGTTGTGCAAGCACCATTTGTT
GATAATGCTATCTTTTTCCCACCGCATGTTTTTAGCTCCCTTGTCAAACA
TCAAGTGTACATAGGTGTTTGTGTTTCTTTTCTTGCATCTTTTTTTTTTA
TCCTTTTTTCCACTTTTCCTGTCCCTACCCTCCCCCTATTTCCTTTTTCT
CCCTCCTTTCCTCTCTTTTGTTCTTTTTTTTTTCTACCTCTGTTTTTCCT
CTCTTCTTGCCTTTTTTCTCTTTGCCCCTACCCCCTTTCCTTTTCCCTTC
TTCTTTTCCCTTTCCTCCTATCTATCTN
CCTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGAGAACAGGGTGGTT
CCCGTTCTCCCGAAGTTCCCATTCATTCAGAGGGGGGCTGACAGAAGGCA
GAGCCAATAAGTACAGCCACCTCAGAAAGGGCTGCAGGGAAGGTAGCCTG
GGAGGTTTGAGGAAGGGGAACAGGACAGGAAGCATCTATGGAGACAAAGT
GGTTGGGGGAGGCTTCTCTGGTGACATTTGAACCAGAGAGCTGTGCTAGG
TAGGCTGTGTAAAGTTCAAAGGCCGGGATGTTTTGCGTACAAGGCATGGG
GTCAGGCTTCCTCAGAAGGTCTGTTCTGAAGAGACCAAGGTAAACATTGT
GCTTTTAATCTATATTTCTTGCAATCCCGACCTTTCTTGATTTTCCCCTG
GTGTGAAAGTCGTGCCCTATGTTTTTCTTATTTTACGGTGCTTTCTCCTT
GTTCCTCTTTTATCACCAATTTCCATGATCACTTTTATTCCATTTCTTTC
GCTATACGCGCTTTTCTACTATTTCCTCTTTTGCTTCACCTCGATCCTAA
TTTCTCCCGTTTTATCCCCTCCTTTCTTCTCCCTCCTCTATTTTCCTCTC
CTTTCTCCTCTTTCCCCTTCCTCCTCCTTTTTATATTCTTTCCCCCCGTC
CCCGTCCTCCGTTATCCATCCTCATCACTCTACTTCCATTCTCCCTATAA
CCCATTTATCCCCCCCTTTGCCTTTATTTCCCCCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_e24.g1 MSMg01no430_e24.g1 CHROMAT_FILE:
MSMg01no430_e24.g1 PHD_FILE: MSMg01no430_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:06 2005
         (249 letters)



>mm_chr7_82998078_82998726
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagagaacagggtggttcccgttctcccgaagttcccattcattcagaggggggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagagaacagggtggttcccgttctcccgaagttcccattcattcagaggggggctga 260

                                                                       
Query: 61  cagaaggcagagccaataagtacagccacctcagaaagggctgcagggaaggtagcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaggcagagccaataagtacagccacctcagaaagggctgcagggaaggtagcctgg 320

                                                                       
Query: 121 gaggtttgaggaaggggaacaggacaggaagcatctatggagacaaagtggttgggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggtttgaggaaggggaacaggacaggaagcatctatggagacaaagtggttgggggag 380

                                                                       
Query: 181 gcttctctggtgacatttgaaccagagagctgtgctaggtaggctgtgtaaagttcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttctctggtgacatttgaaccagagagctgtgctaggtaggctgtgtaaagttcaaag 440

                    
Query: 241 gccgggatg 249
           || ||||||
Sbjct: 441 gctgggatg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)