BAC Information

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BAC

Clone NameMSMg01-430J08
Chromosome7 (Build37)
Map Location 136,397,004 - 136,397,189
singlet/doubletsinglet
Overlap genenone
Upstream geneTgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
Downstream genePpapdc1a, Brwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430J08.T7 (MSMg01no430_j08.b1)MSMg01-430J08.TJ (MSMg01no430_j08.g1)
ACCAG523044AG523045
length834854
length of high quality
(start - end)
187 (76 - 262)89 (79 - 167)
definitionCHROMAT_FILE: MSMg01no430_j08.b1 PHD_FILE: MSMg01no430_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:30 2005CHROMAT_FILE: MSMg01no430_j08.g1 PHD_FILE: MSMg01no430_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCTTTGACTATTCAGACTCCAAGTAAGACCCTACAGGACAGAC
ACAGGGGAAAGCTGGATAAAAAACATCAAGTCCTGATGATGTTCTTTGCG
CCCTAAATGAAGTGGAACCTGAAGCCCATAGGACCGTGGGCCTTTCAGTA
ATTTTTTTCTTAAATACATTTAGCTTGCAGGACCCATGGCTTGCTATAAG
GCTGCTCTGACCACAGCGGCTGTGTGCAGGAATGGTTCCAGCATAAAGAC
TGCATCAACAGAAGCTGCAGGTTATTTTATTCTTTCAAGGCTGGCCCTTT
TGTGCAGCTGTCTTAATTTTATACGCCCCCTCTCCCAACTGACCATTATT
TTATGTTTATTTTTTCTTTAGCCCCCACCCAATCCCCCATTCTGTATCTC
CTTGATTACTCCCTTTTTCTCTTTTCTTTTCTCTTTTTTTCTCTCTTTTC
TTTTTCTCTTTTTCTTCTTTTTTTCCTTTCTTCCCCTCACCCTTCTTATC
TCCCATATTTTTTCAACTCTTTCTTCATTTCACTCTCATTTTCCCCTTTT
TTTTATTTTTCTCACCTTCTCCTCACCACTTCTCCTTTTTTCTTCTTTTC
TTTATTTCTCTTCTTTCTTCTTCCTTATCTTTTTTTACCCTTTTTCTAAC
TTCATTCTCCCTTTGTTTCTTTACTCCCTTATATATCTCCTTTTTAGATT
ACACCTATACCCTTCATCTACCATATTTACATATCCACATTTCTTTACCG
ATTTTCTATATATTCTGCCCCTTCTTCCCTTTTN
NNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTGGGCGTATACATGCTCTTTCCTTC
GCCCTTTCCTTTCCCCCCAGTTTATCTCTACCTCTCCTGTCTCCCTCCCT
TCCTCCCCTTCCTCGCTTCTCCTCCACTGCCCCGTGTATCCCTCCCATCT
TCCTTTTCAGCTCTTTCGTCTTCCTTCCCCCTTCTTTTTTTTTCTCCCCC
CTCACGCGCCACCCGCCTCTCATTCCTTTTCTTCCTACCCTTTTACCCCC
CTTTTTTGTTCCCTCCCTATCCTCCATCCTCCTCCGCCTTTCCCCTACCT
CTTCTCCCTAATCCCCCCCTCACCTCCATCTTCCCTTTCCCTATTTCCCC
TTTCTCCTCCTTCCCCCCTTTTCATCTCCCCCCCTTCCTGACCTCATTTC
CCCTCCATCCCCCACTTTCCTCCCTTTTCCCCCTCACTCCCCTTATTTCC
TTCCCTCCCTCCCCTCCTTCATCCCCCCCCCCTCACTCTATCCCCCCTTT
CCCCTACCCTCTCCCACCCCCATTACTTCCCTATCTCTCGTACCTTTGCA
TCCCTCCCACCTCCGCCTCTCCATCCTCTCTTTCCTATATCCCCCCCACC
CTTCTTTTCCCCACCATACCTATCTCGCCAATCCTATTTCCCCCCCTCCG
CCTTCCCCTCCCCTATCTCTACCTCCCCTATTACCCGCCCCCCTTCTCTC
CTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_j08.b1 MSMg01no430_j08.b1 CHROMAT_FILE:
MSMg01no430_j08.b1 PHD_FILE: MSMg01no430_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:30 2005
         (187 letters)



>mm_chr7_136396804_136397389
          Length = 586

 Score =  323 bits (167), Expect = 4e-93
 Identities = 182/187 (97%), Gaps = 1/187 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagtaagaccctacaggacagacacaggggaaagctggataaaaaacatcaagtcctg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ccaagtaagaccctacaggacagacacagcggaaagctggataaaaaacatcaagtcctg 260

                                                                       
Query: 61  atgatgttctttgcgccctaaatgaagtggaacctgaagcccataggaccgtgggccttt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgatgttctttgcgccctgaatgaagtggaacctgaagcccataggaccgtgggccttt 320

                                                                       
Query: 121 cagtaatttttttcttaaatacatttagcttgcaggacccatggcttgctataaggctgc 180
           |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 321 cagtaatttttt-cttaaatacatttagcttgcagcacccgtggcttgctataaggctgc 379

                  
Query: 181 tctgacc 187
           |||||||
Sbjct: 380 tctgacc 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 586
Length adjustment: 8
Effective length of query: 179
Effective length of database: 578
Effective search space:   103462
Effective search space used:   103462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)