BAC Information

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BAC

Clone NameMSMg01-431G06
Chromosome7 (Build37)
Map Location 29,058,024 - 29,095,702
singlet/doubletdoublet
Overlap geneLOC434156, BC089491, Dll3, Timm50
Upstream geneNumbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2
Downstream geneSupt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431G06.T7 (MSMg01no431_g06.b1)MSMg01-431G06.TJ (MSMg01no431_g06.g1)
ACCAG523660AG523661
length767756
length of high quality
(start - end)		431 (42 - 472)353 (74 - 426)
definitionCHROMAT_FILE: MSMg01no431_g06.b1 PHD_FILE: MSMg01no431_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:40 2005CHROMAT_FILE: MSMg01no431_g06.g1 PHD_FILE: MSMg01no431_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,058,024 - 29,058,449)(29,095,350 - 29,095,702)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCACCTGAATTTCCTCTTTCACAGGTCTAGTCGTTTGTTCCTAGATATCT
CATCTGTTGTCTGCATGAATTCTGTGTACTTGAATGCCAGGTGCTCAAGG
AGGCCACAGGAGGGCGTCTGACCCCTGGAACTGCAGTTACAGAAGGCCGA
GCTGCTGTGTGAACGCTGGGAACTGAACCCAGGTCCGGCAGAGGAGCAGC
CAGTGCTCTGAGCCATCTCTCCAGCCCCACTCAATAATGTTAGTTTGTCT
GATGATTCTTCTCTGACTTTTCATTGTGTGTTCATGTGTGTGGTGTACAC
ATACATGTGTATGTGTGTCCATATGTGCAGAGGCCAGAAGAGGGTGTCAG
GTAACCTCTATCACTTTCCTTGAGACTCTCACTGAACCTGGAGCTAAGCT
GATGGCCTCCTTCTGTCTCTACCTCACAGAGGTGGGGTTATAGCACATGT
GGTCATGCTCAGCTTTAACATGGATGCTGAGACCCCTATTTCAGGTCCCC
ATGAGTGACAGACAGTCTTGTGGGCCCCCCTGTGTTGAACACCTTGAAGT
CCCCCCTTGTCGTACATTTTCACTGTCCCCCTTTTGTTATCCCCCTTTTC
GTCTCTCTTGCTTTTTACTTCCCATTGCCCCCCCCCCCTCTTATTTCCTT
TTTTCCCTCCCCCCTCTCCCCTTTTTCTTTTTTTCTTCTCCTTTTCTCTC
CTTCCTCTCATTATATG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAACTAAGGGAACGGTGGGAAGAGT
AGGGCTAGACCAGTGTGCTTGGTTTCAGTCCTGGGACAAGGGACTGCGGT
TCGTATTGGTGGAGAAATAACCTGTCACCGTGCCTGAAGCTATGTGTCCA
TCTCAGCAGCAGAAGTCTACCTTCCCCTTGTGTGTCCAGCTCAGCCCCAG
CCCACTTGGAATCCTGACCCCTAACCTCTTCCTCCCTTTATCCAGGAGCT
GTGCCTCTAGCCATAATCCCTTTGATTGGGGAGTCCCCACCCCTCACTCT
CCTCCCCCCTCCAGACCCAGTAGACACTGCTCCAAGGCTCCAGTTTTCTT
CATTTGTCTCTTGTCTCCTTCCCTGGCAGGAATAAATCCTGTGGATGATT
TTGCTACCAAGGTTGATATAGCGTCAGTCTTTATCGCCTACTTCTTATTC
TTTTTTTCCCTTTTTTTCCTTCTTTCTTCTTCTTTTTCCTCATTTTTTTT
TCTTTCTTCTCTCTTCTTTCCTTTTCCTTCCTCTTTCTATTTTCTTTCTT
CCTTCCTCTTCCCTTTTCCCTTCTTTTTTTCCTTCCCTCCCTCTCTCTCT
CTTTTCCTCATCTCTTTCTATTACACTCCTTCCCTCTCTCTTTTTTTCAC
TTCCTTTTCCTCTTCTTCCTTTTCCCTCTTCCTTTCTTTTTATTCCCTTT
CTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_g06.b1 MSMg01no431_g06.b1 CHROMAT_FILE:
MSMg01no431_g06.b1 PHD_FILE: MSMg01no431_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:40 2005
         (431 letters)



>mm_chr7_29057819_29058649
          Length = 831

 Score =  770 bits (398), Expect = 0.0
 Identities = 419/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcacctgaatttcctctttcacaggtctagtcgtttgttcctagatatctcatctg 65
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacctgaaattggtctttcacaggtctagtcgtttgttcctagatatctcatctg 265

                                                                       
Query: 66  ttgtctgcatgaattctgtgtacttgaatgccaggtgctcaaggaggccacaggagggcg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgtctgcatgaattctgtgtacttgaatgccaggtgctcaaggaggccacaggagggcg 325

                                                                       
Query: 126 tctgacccctggaactgcagttacagaaggccgagctgctgtgtgaacgctgggaactga 185
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 326 tctgacccctggaactgcagttacagaaggccgagctgctgtgtgaatgctgggaactga 385

                                                                       
Query: 186 acccaggtccggcagaggagcagccagtgctctgagccatctctccagccccactcaata 245
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acccaggtctggcagaggagcagccagtgctctgagccatctctccagccccactcaata 445

                                                                       
Query: 246 atgttagtttgtctgatgattcttctctgacttttcattgtgtgttcatgtgtgtggtgt 305
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 446 atgttagtttgtctgatgattcttctctaacttttcagtgtgtgttcatgtgtgtggtgt 505

                                                                       
Query: 306 acacatacatgtgtatgtgtgtccatatgtgcagaggccagaagagggtgtcaggtaacc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acacatacatgtgtatgtgtgtccatatgtgcagaggccagaagagggtgtcaggtaacc 565

                                                                       
Query: 366 tctatcactttccttgagactctcactgaacctggagctaagctgatggcctccttctgt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tctatcactttccttgagactctcactgaacctggagctaagctgatggcctccttctgt 625

                 
Query: 426 ctctac 431
           ||||||
Sbjct: 626 ctctac 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_g06.g1 MSMg01no431_g06.g1 CHROMAT_FILE:
MSMg01no431_g06.g1 PHD_FILE: MSMg01no431_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:41 2005
         (353 letters)



>mm_chr7_29095066_29095818
          Length = 753

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaactaagggaacggtgggaagagtagggctagaccagtgtgcttggtttcagtcctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aggaactaagggaatggtgggaagagtagggctagaccagtgtgcttggtttcagtcctg 578

                                                                       
Query: 61  ggacaagggactgcggttcgtattggtggagaaataacctgtcaccgtgcctgaagctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggacaagggactgcggttcgtattggtggagaaataacctgtcaccgtgcctgaagctat 518

                                                                       
Query: 121 gtgtccatctcagcagcagaagtctaccttccccttgtgtgtccagctcagccccagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtgtccatctcagcagcagaagtctaccttccccttgtgtgtccagctcagccccagccc 458

                                                                       
Query: 181 acttggaatcctgacccctaacctcttcctccctttatccaggagctgtgcctctagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acttggaatcctgacccctaacctcttcctccctttatccaggagctgtgcctctagcca 398

                                                                       
Query: 241 taatccctttgattggggagtccccacccctcactctcctcccccctccagacccagtag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taatccctttgagtggggagtccccacccctcactctcctcccccctccagacccagtag 338

                                                                
Query: 301 acactgctccaaggctccagttttcttcatttgtctcttgtctccttccctgg 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acactgctccaaggctccagttttcttcatttgtctcttgtctccttccctgg 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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