BAC Information

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BAC

Clone NameMSMg01-432C10
Chromosome7 (Build37)
Map Location 117,368,887 - 117,430,379
singlet/doubletdoublet
Overlap geneSwap70
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneEG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432C10.T7 (MSMg01no432_c10.b1)MSMg01-432C10.TJ (MSMg01no432_c10.g1)
ACCAG524240AG524241
length815784
length of high quality
(start - end)		289 (65 - 353)375 (70 - 444)
definitionCHROMAT_FILE: MSMg01no432_c10.b1 PHD_FILE: MSMg01no432_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:45 2005CHROMAT_FILE: MSMg01no432_c10.g1 PHD_FILE: MSMg01no432_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,368,887 - 117,369,175)(117,430,005 - 117,430,379)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
CTGTATATCCCGAATAGCCTCAATCTCTCTGTTTATCTTTTTATTTGTTT
ATATCCATTACTTATTTTCTTTAAGTGTATACTTCTGTGTGTGCACAATC
ATATGAGCATGTGTGTGCTGTGACATGCATGTGAAAGTGAGTCAGTTCCC
TCCTTTTACCCTGTGGACTCAGGAGGTTGAACTCAGGCCAGGCTAGGTGC
AAATGACTTCCCACTGAGCTGTTTTGCTTGTCTACTTTTTAATTAAAAAT
TTTAGTGTTAAAAGATTTATTTTTATTATTTTTAAGTTATGTGTGTGTTT
GTGTCTTTTTATTTATCACTTCATCTCTTTCCTTGTTCCTTTTTTCCCAG
TTTCTTTTGGTTCCCCTCTTTTTTTTTTTTTCCCCTTTTTTCTTCCATTT
CTATTTCTCTTCTCTTTTTCCTTCTTCCTCTTCTCACTCTTTCTTCCTCT
CTTTTTTTACCTTATTTCTTTTACATTTTTTTCTCCCTTTCTCTTTCTTC
CTATTATTTTATTCTCCCCTCCCCCCCTATTTACACCTCCTTTTTCCCTT
TTTCCACCTCTTTTCTCCTATCCTTCACTCTTACCTTTATCTTTTTCCCT
TTTTTCCCTTTTATCCTTCTACCCTCCCTTCTTTTTTTACTTTTTATTTT
TTTCTTTTTCCCCTTTTTTCCTTTTTCCATTTCTCTCTACTTTTCACCTT
TTTTTTTCCTTTCCTTTTATCTTTCACCTCGTTATTTCTTCTTTTCCCTT
TATTTTTCTTTATTT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAACGAGCCTGTCTATCAAGAGTCCGGGAAG
TCCCCTCAAAGGCATGTGGGGTGTTTTCCACTTAGTATCTGCTTTCCTGA
AGATTCCTGGGAGAAATGGAGACTAGATGCCACTCAGAGCAGCAGGAGCT
GGTCAACCCTGAAGAATCTGTGACCATGGCATAAAACTTCAGTAGCCACC
CAAGAAGTCACAAGGTGCAGGAGCAGAGATGTGGATCCTGGGGACCTGCT
GGTGTATAGCAGTCCTGGCCCCTTGAGATCCCCTCGACCACCGCTTGCTT
AGAGGTAAAAAGGTGGGCTATGAGCTGACAGGAACTAGGTATTTCTGGGC
CCCATTCTGGGGCTGTTTGGTTCATTCCTCCTTGGACGCCTCAGAAGTTG
CACACCTGCCTCTAAGCTTCTCGGTATTTCCCCCAACTCTCCTGAAGCCT
CGCATGAGCAATTTAATACTGTTTTCTGCCTTATGATTTGCATAAATTCC
CACCACTTGGTCTGGCTTACCTCAAAAGGATTGTCCTCTCCCTGTGGCTT
CCCCAATCCTTTTTTGTTCTGCCTTCACCCCCCCTTCTTTCTTTTTTCCT
TTCTCGCTTTCTTTTCTTCCCTGCCCGTTTGTTCGTTCTCTTTCTTTTCT
GTGTTCTTGTTTTTTCTCTCCGTCGTTTTCCCTTTCTTCTTTTTAATCCT
TTCGTTTTTTTTCTTCACTTCCTTTCATTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_c10.b1 MSMg01no432_c10.b1 CHROMAT_FILE:
MSMg01no432_c10.b1 PHD_FILE: MSMg01no432_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:45 2005
         (289 letters)



>mm_chr7_117368687_117369375
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcctcaatctctctgtttatctttttatttgtttatatccattacttattttctttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcctcaatctctctgtttatctttttatttgtttatatccattacttattttctttaa 260

                                                                       
Query: 61  gtgtatacttctgtgtgtgcacaatcatatgagcatgtgtgtgctgtgacatgcatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtatacttctgtgtgtgcacaatcatatgagcatgtgtgtgctgtgacatgcatgtga 320

                                                                       
Query: 121 aagtgagtcagttccctccttttaccctgtggactcaggaggttgaactcaggccaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgagtcagttccctccttttaccctgtggactcaggaggttgaactcaggccaggct 380

                                                                       
Query: 181 aggtgcaaatgacttcccactgagctgttttgcttgtctactttttaattaaaaatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgcaaatgacttcccactgagctgttttgcttgtctactttttaattaaaaatttta 440

                                                            
Query: 241 gtgttaaaagatttatttttattatttttaagttatgtgtgtgtttgtg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttaaaagatttatttttattatttttaagttatgtgtgtgtttgtg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no432_c10.g1 MSMg01no432_c10.g1 CHROMAT_FILE:
MSMg01no432_c10.g1 PHD_FILE: MSMg01no432_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:46 2005
         (375 letters)



>mm_chr7_117429805_117430579
          Length = 775

 Score =  679 bits (351), Expect = 0.0
 Identities = 369/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacgagcctgtctatcaagagtccgggaagtcccctcaaaggcatgtggggtgttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaacgagcctgtctatcaagagtccgggaagtcccctcaaaggcatgtggggtgttttcc 516

                                                                       
Query: 61  acttagtatctgctttcctgaagattcctgggagaaatggagactagatgccactcagag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acttagtatcggctttcctgaagattcctgggagaaatggagactagatgccactcagag 456

                                                                       
Query: 121 cagcaggagctggtcaaccctgaagaatctgtgaccatggcataaaacttcagtagccac 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 455 cagcaggagctggtcaaccctgaagaatctgtgaccatggcataaaccttcagtagccac 396

                                                                       
Query: 181 ccaagaagtcacaaggtgcaggagcagagatgtggatcctggggacctgctggtgtatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 395 ccaagaagtcacaaggtgcaggagcagagatgtggatcctggggacctgctggggtatag 336

                                                                       
Query: 241 cagtcctggccccttgagatcccctcgaccaccgcttgcttagaggtaaaaaggtgggct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 335 cagtcctggccccttgagatcccctcgaccaccgcttgcttagaggtaaagagctaggct 276

                                                                       
Query: 301 atgagctgacaggaactaggtatttctgggccccattctggggctgtttggttcattcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atgagctgacaggaactaggtatttctgggccccattctggggctgtttggttcattcct 216

                          
Query: 361 ccttggacgcctcag 375
           |||||||||||||||
Sbjct: 215 ccttggacgcctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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