BAC Information

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BAC

Clone NameMSMg01-432G17
Chromosome7 (Build37)
Map Location 57,939,439 - 57,939,877
singlet/doubletsinglet
Overlap geneNell1
Upstream geneHtatip2, Prmt3, Slc6a5, 4933405O20Rik
Downstream geneEG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432G17.T7 (MSMg01no432_g17.b1)MSMg01-432G17.TJ (MSMg01no432_g17.g1)
ACCAG524442AG524443
length783766
length of high quality
(start - end)		439 (67 - 505)440 (75 - 514)
definitionCHROMAT_FILE: MSMg01no432_g17.b1 PHD_FILE: MSMg01no432_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:08 2005CHROMAT_FILE: MSMg01no432_g17.g1 PHD_FILE: MSMg01no432_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGGTCTTCCAAGAGCCTTCAAATGGCTGGTCATAGCAATGACCCA
TCTTCTTTCATCAGTGTGTATTAACCCATCCATGCTTATATGGTCCTTGG
GTTAGTATTTAGGCTCTTGTTCTCCCCCACCCCCTCCTATTTCTTCCATG
ATTCCCATTTGGATTCCCTAATGTCCCATTCTATTTTCACTGTTTAGATA
GTTTCACATTCTATATACTTGTTTTCCTCAGTATGGTTTATTCTACTTCA
CAAGTTTATATCACTTAATAGACTCATCCTAATTCCAACCAGTTTACTAA
GACAACATGATTGAAATTGTTATATTAGATAAAGGATAGTTCAAGTCCAC
TCCCCTGTTAATGGACACTTAGGCCAGTGGCATGACCTGGTCATCAGGAC
TGGTGTAGGAGTAAGCACCTATCTCTGTGGAGTGCTGCCTTTGACTCCTT
GGGTATCTAACTTGGGCTCCTATCACTGAGGCCTATTGGAGGTACTGCTT
TTCGAACATTAGTATAGCTGAAGTCTGAGGCTTTCTGCTGATGGTCTCTA
GGACTCAACCGGTGACTGTGAATCACTTGGCCTTGCCCTCTTTCAACATG
GTTAAAATGGAACTTTTTATATGGGTCTTTCCCCCTGCCGGAGAAGACAG
CACCCCTATGTCGGGTGGGCCCCCTTCCCCTTCCCTTCTCCGGTTTTAAA
GTGGAGTTTCCCCTTTTTTGGTACCTACAAAAT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAAACTAGATATGAAAATGAAACC
ATATAATCTAATTTTAAAAATTGGATACAGATCTAAACAAATTCTTATTA
GAGGAAATTCAAATGACTGGGAAATGTTCAAAACCTTTAGCAATCATGGA
AATGCAAATTAAAACTTTTATTGAGATAACATCTTATACCTGTCGGGCCA
ATAATGTAGGTGACAGTTCAGACTGGTACAGATGTGGACTAAAGGGAACA
CTCCTCCATTGCTAGCTAGTTGGAGTGCAAATTGTACAGCTACTATGAAA
ATCAATATGATGGTTCCTCAGATAGATGGGAAACAATCTACCTCAAGATC
TAGTTCTACCTAACTCTTGAGCATATACCCAAAGTAAGAATTATCCTACC
ACAGAGACAGTTGCACAATCATGTTTGTTGACTCTATTTATAATATTCAG
AAATAGAAAGCAACCTAGATGTTGCCCAACAGAAGAATGGATAAAGAAAT
GTTATATATTTATACAATGCAGTATTATTTCAGCCATTAAATAACTGACA
TCCTGAAATTTGCGGCAAACGAAAGAGTAGAAAAAATCCTCTTGACGTAC
TAGCCCGACCAAAAAGATAATAAGGGAAATATTCATTTAAATATATAAAT
CTCATTANNNNNNCTCCCTCTTCTCCCCCGCGGGCGGGGAAAAGAAAAAT
TATATTTATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_g17.b1 MSMg01no432_g17.b1 CHROMAT_FILE:
MSMg01no432_g17.b1 PHD_FILE: MSMg01no432_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:08 2005
         (439 letters)



>mm_chr7_57939239_57940077
          Length = 839

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccttcaaatggctggtcatagcaatgacccatcttctttcatcagtgtgtattaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagccttcaaatggctggtcatagcaatgacccatcttctttcatcagtgtgtattaacc 260

                                                                       
Query: 61  catccatgcttatatggtccttgggttagtatttaggctcttgttctcccccaccccctc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacccatgcttatatggtccttgggttagtatttaggctcttgttctcccccaccccctc 320

                                                                       
Query: 121 ctatttcttccatgattcccatttggattccctaatgtcccattctattttcactgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatttcttccatgattcccatttggattccctaatgtcccattctattttcactgttta 380

                                                                       
Query: 181 gatagtttcacattctatatacttgttttcctcagtatggtttattctacttcacaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagtttcacattctatatacttgttttcctcagtatggtttattctacttcacaagtt 440

                                                                       
Query: 241 tatatcacttaatagactcatcctaattccaaccagtttactaagacaacatgattgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatcacttaatagactcatcctaattccaaccagtttactaagacaacatgattgaaa 500

                                                                       
Query: 301 ttgttatattagataaaggatagttcaagtccactcccctgttaatggacacttaggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgttatattagataaaggatagttcaagtccactcccctgttaatggacacttaggcca 560

                                                                       
Query: 361 gtggcatgacctggtcatcaggactggtgtaggagtaagcacctatctctgtggagtgct 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggcatgacctggtaatcaggactggtgtaggagtaagcacctatctctgtggagtgct 620

                              
Query: 421 gcctttgactccttgggta 439
           |||||||||||||||||||
Sbjct: 621 gcctttgactccttgggta 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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