BAC Information

Click to search

BAC

Clone NameMSMg01-432P02
Chromosome7 (Build37)
Map Location 31,733,371 - 31,936,315
singlet/doubletdoublet
Overlap geneUsf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a
Upstream geneZfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1
Downstream geneLOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432P02.T7 (MSMg01no432_p02.b1)MSMg01-432P02.TJ (MSMg01no432_p02.g1)
ACCAG524841AG524842
length798750
length of high quality
(start - end)		257 (43 - 299)473 (72 - 544)
definitionCHROMAT_FILE: MSMg01no432_p02.b1 PHD_FILE: MSMg01no432_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:52 2005CHROMAT_FILE: MSMg01no432_p02.g1 PHD_FILE: MSMg01no432_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(31,936,062 - 31,936,315)(31,733,371 - 31,733,843)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTATGTTTCCCAAGCTGGCCTCGAACTCATGCCAATCCTCCTGTCTC
AGCCTCTGGGATGTGAGGCGTGCGCTATCACGCCCCGCCCAGGCTGCTCA
TTTTAAATAAAAATTTTCTTCTGTCTCCCAGCCGGACTCTTTCCCCAGCC
ATCCTAGGCCTAGGCCCGCGCTCGCGTCCATGTCCCCCTCCCGGCGGGGG
CGGCGCCGTGACGCGCGGGGCGGGAGCAGGAAGGCGGTGTCGCTGACGCC
GAGGCGGCCTCGGGCGTTTCCGGCCTTGTGCGCCGGTGGCAGGGTCCGGT
GGAGGCGGCGGCCGAGGCAGGCGAGGCCCGGGAGGTCCATCTCAGTGCAT
CCGTGCGAGTCCTGCCCTGCAGTCGTGCCGTCGCATCCTTGTTTTATAAT
TCCTCCTTTCTCGTGGTGTTAAATTGTTCTACTTCGCCGTCTATCCCTTC
TTTTTCTCATATTCGCTACCCGTCTCTCTTCTCTCTGTTCTCTTTTTCTT
TATTCTCTCTCCTTTCTTGATCTCTTACTGTTCTCTCTATTCTATTAAAT
CTATATCTTAATCCTACATTGCTCTCATTTGTGCCCACCATTCACCACCC
CTTTTCTTTTCCCATTTGTTTTTCCTCTCTTTTATCTTTATTCCTCCCTA
CATATATTTTATCATAATTTACCATCTTCTATTACGCAAGCTTTCTCGCC
GTGATATTAACCTATCATCTCTCTTCTTGTACGATCACACCACACACT

ATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAAGTGCTGCGGTATGTCTCCACTACGC
CCTGGGCTAGCTCACTCATGTCACCACCAAGTTGGAACCATCCTTTGGGA
ACTTGGTGGAGGACTGCAGCAGCATAGTTGAGTCTAGCCAAGGCCTAGAA
GCACACCCACTGTAGTCCCTTGCTGGGTGCTCTATCTCTAGGGTTCTACA
GGCCTCACTGAGTAGTTCTCCACCTTCCTCTCTTCTAGGGCTTGGGCCCC
AGGCAGGACCTTCCTCTGACAGACACACCTCAACCCTCAGGCTAAGAGTA
GATGTGCAAGGCAGAGTTCCTTTGTGTACATTTAATTTTGCAAAATGTAG
AGGTGTGTGGCTGCATCCAGTGGACTCAATCCTGGCTCTGTCCTGGCTGG
TGCTCATGATGCCACCGTGAAGTGATGTACAATAGGGACCCTGTACCTAG
AGTACATGTGCCCAAAGAAGGGCAGGGTGCAACAATGCTTTCTGTATACA
GCCCACAATCAGAATTCCCAGAGACCAGAAATACTTGGGTTTCAGAGAGA
AAGGACCCCAGGCAGATGTAAAGGGAGATCAGGACCCCCGGAAAGAAAAT
AAACCCTTGTGTGTTCGTATGTGTTGTGTTTGTCTTTTTCACATACATTC
CCTTATCCTCTTTTTTCTGTCTTAGTTTCCTCTTTTCCTCACATCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_p02.b1 MSMg01no432_p02.b1 CHROMAT_FILE:
MSMg01no432_p02.b1 PHD_FILE: MSMg01no432_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:52 2005
         (257 letters)



>mm_chr7_31935826_31936482
          Length = 657

 Score =  468 bits (242), Expect = e-136
 Identities = 251/254 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattatgtttcccaagctggcctcgaactcatgccaatcctcctgtctcagcct 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggaattcattatgtagcccaagctggcctcgaactcatgccaatcctcctgtctcagcct 431

                                                                       
Query: 64  ctgggatgtgaggcgtgcgctatcacgccccgcccaggctgctcattttaaataaaaatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgggatgtgaggcgtgcgctatcacgccccgcccaggctgctcattttaaataaaaatt 371

                                                                       
Query: 124 ttcttctgtctcccagccggactctttccccagccatcctaggcctaggcccgcgctcgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttcttctgtctcccagccggactctttccccagccatcctaggcctaggcccgcgctcgc 311

                                                                       
Query: 184 gtccatgtccccctcccggcgggggcggcgccgtgacgcgcggggcgggagcaggaaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 310 gtccatgtccccctcccggcgggggcggcgccgtgacgcgcggggcgggagcaggaaggg 251

                         
Query: 244 ggtgtcgctgacgc 257
           ||||||||||||||
Sbjct: 250 ggtgtcgctgacgc 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no432_p02.g1 MSMg01no432_p02.g1 CHROMAT_FILE:
MSMg01no432_p02.g1 PHD_FILE: MSMg01no432_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:52 2005
         (473 letters)



>mm_chr7_31733171_31734043
          Length = 873

 Score =  806 bits (417), Expect = 0.0
 Identities = 459/473 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagtgctgcggtatgtctccactacgccctgggctagctcactcatgtcaccaccaag 60
           |||||||||| ||||||| ||||||| || |||||||| |||||| ||||||||||||||
Sbjct: 201 ataagtgctgtggtatgtgtccactatgctctgggctaactcacttatgtcaccaccaag 260

                                                                       
Query: 61  ttggaaccatcctttgggaacttggtggaggactgcagcagcatagttgagtctagccaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttggaaccatcctttgggaacttggtggaggactgcagcagcatagttgagtctagtcaa 320

                                                                       
Query: 121 ggcctagaagcacacccactgtagtcccttgctgggtgctctatctctagggttctacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctagaagcacacccactgtagtcccttgctgggtgctctatctctagggttctacag 380

                                                                       
Query: 181 gcctcactgagtagttctccaccttcctctcttctagggcttgggccccaggcaggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcactgagtagttctccaccttcctctcttctagggcttgggccccaggcaggacct 440

                                                                       
Query: 241 tcctctgacagacacacctcaaccctcaggctaagagtagatgtgcaaggcagagttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctctgacagacacacctcaaccctcaggctaagagtagatgtgcaaggcagagttcct 500

                                                                       
Query: 301 ttgtgtacatttaattttgcaaaatgtagaggtgtgtggctgcatccagtggactcaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgtacatttaattttgcaaaatgtagaggtgtgtggctgcatccagtggactcaatc 560

                                                                       
Query: 361 ctggctctgtcctggctggtgctcatgatgccaccgtgaagtgatgtacaatagggaccc 420
           |||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct: 561 ctggctctgtcctggctggtactcatgatgccactgtgaagtgatatacaatagggaccc 620

                                                                
Query: 421 tgtacctagagtacatgtgcccaaagaagggcagggtgcaacaatgctttctg 473
           |||||||| ||||||  ||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tgtacctacagtacacatgcccaaagaagggcagggtgcagcaatgctttctg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |