BAC Information

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BAC

Clone NameMSMg01-433B18
Chromosome7 (Build37)
Map Location 148,491,690 - 148,629,977
singlet/doubletdoublet
Overlap geneDeaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd
Upstream geneEG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4
Downstream geneRplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433B18.T7 (MSMg01no433_b18.b1)MSMg01-433B18.TJ (MSMg01no433_b18.g1)
ACCAG524968AG524969
length786785
length of high quality
(start - end)
397 (34 - 430)226 (64 - 289)
definitionCHROMAT_FILE: MSMg01no433_b18.b1 PHD_FILE: MSMg01no433_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:06 2005CHROMAT_FILE: MSMg01no433_b18.g1 PHD_FILE: MSMg01no433_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,491,690 - 148,492,081)(148,629,752 - 148,629,977)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGAATCCGCGGAATTCAGTAC
ATTCTCACATATAGTCCCAGAACCTGGAATTCAGTACATACAGACATATA
GTCCCAGAACCTGGGAGGCAGATGCAGCAGGATTGTAAGTTCTAGACCAA
CCTGGGCTACACAGCAACCAAGAAAGAAAGGTGTGTGTGCCCCTATGTAA
GAGCTCCAATGTCCCCAAGTGGGAGTGAAATAGAACGAGACAGTGAGGGC
CAGCCGTCGTGGTGCTTGGCCATGGCTGAGCATTACAGGCTACCCTGCCG
TCGCTATCTCTGGGTCAGAAAGTAGCAGCACTGGGATGACTGTCCAGAAT
GGTGTCTAGTCTAAGTGTTGCTGATGGACAAGCTACAGGTAGAATGGTGA
CTCCCAGGAGCATTCCCAAGGGTCCTCAGAGGAGACGGAAGGGAGGGATG
CCCATCTCCTCTCTGAACATCCACTTCATAAATGCACCCCGTAGGCCGCT
ATTGTCCTGTATCACCCCTTTTTTTTCTCACCTCATTTTTTTCACACTCT
TTTATTCCCTCTTTTCTATTCCTTGTTTTTCCCCTCCTCACCCTCTATCC
TCTCTTCTTCTTCTTTTCTCCTCCTCTCTTCTTATTCCTCCCCCTTCTTT
TCCTTCTTTTTCTTCCTCCCTTTTCTTTCTTTTTCTTTCTTCCTCCCCCC
TCCCCTCCTCCATCCTCTTTTTCTCCCTCTCTCTCCTACCCCTCATACTC
ATTTTTTTTTCCCCCTTCTCTTCTCTCCTCCTTTTN
TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTACTGGCTAGCCCGGAGGGGCGGAGCCCGACGGGTG
GCCCGCCCGGAAGCGCGCCGGCGGGAAGGCAGCACAGAGCGCGCCTAGAC
TGGCGGGGAGATCAGCGTGGCAGGTACTCAATGGGAGGCGGGAAGTTTGC
TCCAGAGGCGGGACCAAAGCGACTCCTCACCTACCGAGACCCCCTCTGCT
TTCCCCATTTGACGGAGGTGGGAATTGGTAATTGTGGCTCAAGAGCGCCT
ACTATGTTCCGCGATATGGGACCCTAGCACAAGAATCCTTAAGTCCTCCT
TGCTCCTCTTCTTACTGTTTATTGACCCTCTTTGGTTACAGTGAACGTCT
GCCCCGCCACACAGGTCTGGTTTCTCCCTTTGCTTTTTGCCCGTTAACAC
ATAAACGGGGTCCCTATTTCCCTGATCCCTGTTTGCGCTTTCCCACCTTT
CGTGCCTCCTCCTTTCACTGATGTCGTAATTCCCCTCCCTTGCCTCCCCT
ATTTCCCCTACTTTCCCCCTTTTTCTTTTGTCCCTTCCCTTTCTCCCTTT
TCCGTTCCTTCTCTTCCTCAATGTACCCCCCTCCATCCTCCCCCCTTTTC
TTCCTCCTGATTCCATTTCTCTCCACCTTCCCTTTTCTTCTCCTCCTCTT
CCTTCTTCTTCCTCTCCTTTCCCCTCTTCCCTTTTCCTCCTTTCTTTCCT
TCCCTTTCTCCTCCCCTTTTTCTTTTTCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_b18.b1 MSMg01no433_b18.b1 CHROMAT_FILE:
MSMg01no433_b18.b1 PHD_FILE: MSMg01no433_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:06 2005
         (397 letters)



>mm_chr7_148491485_148492281
          Length = 797

 Score =  719 bits (372), Expect = 0.0
 Identities = 387/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcagtacattctcacatatagtcccagaacctggaattcagtacatacagacata 65
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcagtacatacagacatatagtcccagaacctggaattcagtacatacagacata 265

                                                                       
Query: 66  tagtcccagaacctgggaggcagatgcagcaggattgtaagttctagaccaacctgggct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagtcccagaacctgggaggcagatgcagcaggattgtaagttctagaccaacctgggct 325

                                                                       
Query: 126 acacagcaaccaagaaagaaaggtgtgtgtgcccctatgtaagagctccaatgtccccaa 185
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 326 acacagcaaccaagaaagaaaggtgtgtgtgcccctgtgtaagagctccaatgtccccaa 385

                                                                       
Query: 186 gtgggagtgaaatagaacgagacagtgagggccagccgtcgtggtgcttggccatggctg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgggagtgaaatagaacgagacagtgagggccagccgtcgtggtgcttggccatggctg 445

                                                                       
Query: 246 agcattacaggctaccctgccgtcgctatctctgggtcagaaagtagcagcactgggatg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcattacaggctaccctgccgtcgctatctctgggtcagaaagtagcagcactgggatg 505

                                                                       
Query: 306 actgtccagaatggtgtctagtctaagtgttgctgatggacaagctacaggtagaatggt 365
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 actgtccagaatggtgtctagtctaagtgttgctgatggacaagctgcaggtagaatggt 565

                                           
Query: 366 gactcccaggagcattcccaagggtcctcaga 397
           ||||||||||||||||||||||||||||||||
Sbjct: 566 gactcccaggagcattcccaagggtcctcaga 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no433_b18.g1 MSMg01no433_b18.g1 CHROMAT_FILE:
MSMg01no433_b18.g1 PHD_FILE: MSMg01no433_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:06 2005
         (226 letters)



>mm_chr7_148629552_148630177
          Length = 626

 Score =  414 bits (214), Expect = e-120
 Identities = 223/226 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactggctagcccggaggggcggagcccgacgggtggcccgcccggaagcgcgccggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctactggctagcccggaggggcggagcccgacgggtggcccgcccggaagcgcgccggcg 367

                                                                       
Query: 61  ggaaggcagcacagagcgcgcctagactggcggggagatcagcgtggcaggtactcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaaggcagcacagagcgcgcctagactggcggggagatcagcgtggcaggtactcaatg 307

                                                                       
Query: 121 ggaggcgggaagtttgctccagaggcgggaccaaagcgactcctcacctaccgagacccc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 306 ggaggcgggaagtttgctccagaggcgggaccaaagcgattcctcacctaccgagacccc 247

                                                         
Query: 181 ctctgctttccccatttgacggaggtgggaattggtaattgtggct 226
           ||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 246 ctctgctttccccatttgacggaggtgtgaattgggaattgtggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)