BAC Information

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BAC

Clone NameMSMg01-433C24
Chromosome7 (Build37)
Map Location 91,533,448 - 91,698,457
singlet/doubletdoublet
Overlap geneLOC100039239
Upstream geneEG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2
Downstream geneFah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C24.T7 (MSMg01no433_c24.b1)MSMg01-433C24.TJ (MSMg01no433_c24.g1)
ACCAG525028AG525029
length761774
length of high quality
(start - end)
403 (67 - 469)330 (71 - 400)
definitionCHROMAT_FILE: MSMg01no433_c24.b1 PHD_FILE: MSMg01no433_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:12 2005CHROMAT_FILE: MSMg01no433_c24.g1 PHD_FILE: MSMg01no433_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,533,448 - 91,533,850)(91,698,128 - 91,698,457)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAATTCA
GGGCAAATTTCCTCTGTGTTCGTGAGTCATGGTCATTCATATCTAACTCC
AAGATAAGCTCCTCCCTTCCAGGAGAATGCTTTATTTCTTGAGTCATCAG
AGCAGACATCATGGTAGGGTAGTCTAATACAGAAGTGATGAGTCCTATGA
CCCAAGAAACGGTTCAAATGTCTTCATCAAAGCAGATGAGAGACACTAAA
CACAATTGCTTAAGCCTCAGCTGGCTGGCCCGGAGCTACAGAAGAAGCCT
AGCTTCTTGGGTTAGCACATCTGCTAACTCCACTGCCTCATCCTGTCTCT
CTGAGTTAGTAACCTTACCACCCCAAGTGTGAGTCACATACAAAATAATC
TAATCCAATAATTTGCGCTGGCGTTGTGGACTGAATTGCGCCTCACCAAA
TGCGCATGTTGAAACCTTAACCCCTAAAATTATATACTGGTAGAGGAGAC
TTTCAGGAGTCATCACGTCTAGATAATGTCCTCAGAGTGGGTTCCCCCAT
GGGCTTACTGACCTTATGAGAGGAGACCCCTTTCCTTTTTCTCTGCCCCA
TGTGGCCAGAAAAAGTATAGGTCTCCTTTTTTTCTTTTCCCCCCTTTTTT
TTTTTGGCCGTATTTTTTTTCCCCCTTTTCTTTACATTCCTTCCTTCCTA
ACTCTAGAAATACATTCTCTTCTCCCCTCTTCCCCTTCCTTTTTTTTCCC
CTCTTTTCCTC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGTTCTGTGACATATGGGGAAGGTGCCA
TTTGGGTGCTTGTAACCAGTAGGTTATAGATATAGTTCTGGTTTGTCTGA
ATTTTGTAGGCTTCCATTGCTTAAGCCATTGGCTATAACAGCTCTCAGGC
TTTGTTGTCTGCTTGCTTGGCTGAAGTAGATTCCCAGGAGCTCTTGTGGG
CTGCAGAACCTGAACAGTTGTCTCCTACATATATACTCAGTGGCTGACTC
AGGCCCTATAATGGGCTTTCTCCTTACTGCCAATCTAAGAGTTATAAAGA
GTCCTATAGAAGGGCTGCAGCCATTCTGACCATTGCTTACAATTTCTTGT
GTTCTTTAAAAAATGCGCCTTACTTCTTTCCCAATCACTAATTTTCGCGT
CATGGATTCCTTCCTAAAACTCCCTTTGCTATCTTCCCCATGTCGTCCTA
TACCCCCCCGTGCATCTCCTCTCTCCCCCAGTTACCGTCGTCTCTTTTTC
TTCCCCCCTCCTCCCTTCCGTTACTTACCTCTTTCCCCTTTCCCGCTCTT
ACTCCCCCTTCGTCCCTTATCTTCTTCCTCCTTTTCCTTCTTCCTTTTCT
TCCCTTTTCCCCCCCCCCCCTCTTTCTTCCCTCTCCCTCTCCCACTTTTT
CCCTTCCCCTTTCCGCTCCTTTCCCCCTTTTCCCTTTCCTTTCCATTCTC
CCTTTTTCCCCTTTCTTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c24.b1 MSMg01no433_c24.b1 CHROMAT_FILE:
MSMg01no433_c24.b1 PHD_FILE: MSMg01no433_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:12 2005
         (403 letters)



>mm_chr7_91533248_91534050
          Length = 803

 Score =  741 bits (383), Expect = 0.0
 Identities = 398/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcgtgagtcatggtcattcatatctaactccaagataagctcctcccttccaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcgtgagtcatggtcattcatatctaactccaagataagctcctcccttccaggaga 260

                                                                       
Query: 61  atgctttatttcttgagtcatcagagcagacatcatggtagggtagtctaatacagaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 atgctttatttcttgagtcatcagagcagacatcatggtagggtagtctaatacagaagc 320

                                                                       
Query: 121 gatgagtcctatgacccaagaaacggttcaaatgtcttcatcaaagcagatgagagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgagtcctatgacccaagaaacggttcaaatgtcttcatcaaagcagatgagagacac 380

                                                                       
Query: 181 taaacacaattgcttaagcctcagctggctggcccggagctacagaagaagcctagcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacacaattgcttaagcctcagctggctggcccggagctacagaagaagcctagcttc 440

                                                                       
Query: 241 ttgggttagcacatctgctaactccactgcctcatcctgtctctctgagttagtaacctt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgggttagcacacctgctaactccactgcctcatcctgtctctctgagttagtaacctt 500

                                                                       
Query: 301 accaccccaagtgtgagtcacatacaaaataatctaatccaataatttgcgctggcgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct: 501 accaccccaagtgtgagtcacatacaaaataatctaatccaataatttgtgttggtgttg 560

                                                      
Query: 361 tggactgaattgcgcctcaccaaatgcgcatgttgaaacctta 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggactgaattgcgcctcaccaaatgcgcatgttgaaacctta 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no433_c24.g1 MSMg01no433_c24.g1 CHROMAT_FILE:
MSMg01no433_c24.g1 PHD_FILE: MSMg01no433_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:12 2005
         (330 letters)



>mm_chr7_91697928_91698657
          Length = 730

 Score =  576 bits (298), Expect = e-169
 Identities = 322/330 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgttctgtgacatatggggaaggtgccatttgggtgcttgtaaccagtaggttataga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 530 aatgttctgtgacatatggggaaggtgccatttgggtgcttgtaaccagtgggttataga 471

                                                                       
Query: 61  tatagttctggtttgtctgaattttgtaggcttccattgcttaagccattggctataaca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 470 tatagttctggtttgtctgaattttttaggcttccattgcttaagccattggctataaca 411

                                                                       
Query: 121 gctctcaggctttgttgtctgcttgcttggctgaagtagattcccaggagctcttgtggg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gctctcaggctttgttgtctggttgcttggctgaagtagattcccaggagctcttgtggg 351

                                                                       
Query: 181 ctgcagaacctgaacagttgtctcctacatatatactcagtggctgactcaggccctata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctgcagaacctgaacagttgtctcctacatatatactcagtggctgactcaggccctata 291

                                                                       
Query: 241 atgggctttctccttactgccaatctaagagttataaagagtcctatagaagggctgcag 300
            |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 290 ctgggctttctccttactgccaatctaagagttataaagagccctagagaagggctgcag 231

                                         
Query: 301 ccattctgaccattgcttacaatttcttgt 330
            |||||||||||||||||||| ||||||||
Sbjct: 230 tcattctgaccattgcttacactttcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)