BAC Information

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BAC

Clone NameMSMg01-433E03
Chromosome7 (Build37)
Map Location 84,056,341 - 84,056,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E03.T7 (MSMg01no433_e03.b1)MSMg01-433E03.TJ (MSMg01no433_e03.g1)
ACCAG525082AG525083
length712727
length of high quality
(start - end)
569 (41 - 609)482 (71 - 552)
definitionCHROMAT_FILE: MSMg01no433_e03.b1 PHD_FILE: MSMg01no433_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:18 2005CHROMAT_FILE: MSMg01no433_e03.g1 PHD_FILE: MSMg01no433_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTCTCTTCAGCACTGCATTTCAAAGCATCGCAGACACCTTGGTGCACTC
TGTGAGAATTTTAATCAGATGAATGCATGTTAAGTAACTGGTGGAAATGT
GCACATGAGTGCTTCTCTGTTTCCTGTCATCAAGCAATGACACATTCGGA
GTATAAATTACACAACATATGACTGGGAATGAAGTAATGCCAGGCTGCAT
CGTGCTTATAGCTCCATAATATTATTGCTGCAGGATAAACTGAGTGGAAG
TTTCACTCATTCCCAGTACAGAATCCTAACATTCTTCCCAGTAATTCAAC
CAGCATAGAGAGAGTGTTTACTGTGCATGGAATACTTTATGTAGATAGTG
TGATGTGATTTCCACAAAGGATCTATGAATTTGGAACTACTTAATATGCT
GATTCAACGGGTAAGGGAACATCAAGTTGGGATAACAGCTCATTAGTGAG
AGCTGGGTTCAAGGCATTGGATAAACCTTTTCAGTGTATGTTCATATGTA
TTTTTTAGAACAGCCAAGTGAAGATACTATTATGTTCATTTCATGTGTGA
GGAAACTCAAGCACATAAGCAACATATCTAAGAGCATGCCATCTACTTTT
GAAAACCTGGAGTCAGAATTGAGTCATCTAGCATTAAGAGTCAAGCCCAT
TACACCAATCCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTATTCAAATTTCAGACCCATGTTTTTGA
ACTAGTCATATTTTTATTCTTTGTGTTTTGAGTTCTTTACATGCTATGGA
TATTAATACTCTGTTAGAGTTAAAACTGGCCAAGATTATTTTCTATTCTA
TGGACTTCCTCTTCACCTGGTTATTACTATAGATTCATAGAAGCTGTTTT
AGTTTTTATGAAACCCCAATTAGTAATTGCTGGTCTTAATTTTGTGGTAA
ACATAGTCCTACTCAGGAAATACTTTCCTGTATATCTATCATATAAGGTA
CTGCCTATGATTTCTTCTAGAAATTTCAGTATTTCAAGTTTCACAATTAG
GCCTTTGTTCTTCTTGGAGTCAATTGTGCAAGGTGATGGGTATGGGTCTC
TTTTTAATCTTCTACATCTTGATATCTTGATTTCCCAGCCCCATTTCTGT
TTTTTTTTTTTTATTCTTCATCAAATATCAGTTACCTGAATTCATGTATA
CTCATGCTGGGGTTCTTTATTTTGCTCCGTTGGTCTACTTGCGTGTTTCT
GCGCAACGTACCTTATATTTTTACCCTCATTGCGTTTACTCTTTCTCCCA
ATTTCCCGCAAAGCCAATATTTCTTGCCCTCATTTTCTCCTCCTTTCCTC
TGTTTTCATGCTTTTCCCTGGTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e03.b1 MSMg01no433_e03.b1 CHROMAT_FILE:
MSMg01no433_e03.b1 PHD_FILE: MSMg01no433_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:18 2005
         (569 letters)



>mm_chr7_84056244_84057212
          Length = 969

 Score = 1015 bits (525), Expect = 0.0
 Identities = 555/565 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctcttcagcactgcatttcaaagcatcgcagacaccttggtgcactctgtg 64
           |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 662 gaattctctctctttagcactgcatttcaaagcatcgcagacacctttatgcactctgtg 603

                                                                       
Query: 65  agaattttaatcagatgaatgcatgttaagtaactggtggaaatgtgcacatgagtgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agaattttaatcagatgaatgcatgttaagtaactggtggaaatgtgcacatgagtgctt 543

                                                                       
Query: 125 ctctgtttcctgtcatcaagcaatgacacattcggagtataaattacacaacatatgact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctctgtttcctgtcatcaagcaatgacacattcggagtataaattacacaacatatgact 483

                                                                       
Query: 185 gggaatgaagtaatgccaggctgcatcgtgcttatagctccataatattattgctgcagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||
Sbjct: 482 gggaatgaagtaatgccaggctgcatcgtgcttatagctccataatactatcactgcagg 423

                                                                       
Query: 245 ataaactgagtggaagtttcactcattcccagtacagaatcctaacattcttcccagtaa 304
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 422 ataaactgagtggaaggttcactcaatcccagtacagaatcctaacattcttcccagtaa 363

                                                                       
Query: 305 ttcaaccagcatagagagagtgtttactgtgcatggaatactttatgtagatagtgtgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcaaccagcatagagagagtgtttactgtgcatggaatactttatgtagatagtgtgat 303

                                                                       
Query: 365 gtgatttccacaaaggatctatgaatttggaactacttaatatgctgattcaacgggtaa 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 302 gtgatttccacaaaggatctatgaatttggaactacttaatatgctgattcaactggtaa 243

                                                                       
Query: 425 gggaacatcaagttgggataacagctcattagtgagagctgggttcaaggcattggataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gggaacatcaagttgggataacagctcattagtgagagctgggttcaaggcattggataa 183

                                                                       
Query: 485 accttttcagtgtatgttcatatgtattttttagaacagccaagtgaagatactattatg 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 182 accttttcagtgtatgttcatatgtattttctagaacagccaagtgaagatactattatg 123

                                    
Query: 545 ttcatttcatgtgtgaggaaactca 569
           |||||||||||||||||||||||||
Sbjct: 122 ttcatttcatgtgtgaggaaactca 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)