BAC Information

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BAC

Clone NameMSMg01-433K20
Chromosome7 (Build37)
Map Location 75,937,241 - 75,937,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K20.T7 (MSMg01no433_k20.b1)MSMg01-433K20.TJ (MSMg01no433_k20.g1)
ACCAG525404AG525405
length832793
length of high quality
(start - end)
207 (49 - 255)375 (69 - 443)
definitionCHROMAT_FILE: MSMg01no433_k20.b1 PHD_FILE: MSMg01no433_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:50 2005CHROMAT_FILE: MSMg01no433_k20.g1 PHD_FILE: MSMg01no433_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCG
GAATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTTACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGTCATTGCTGTT
CTGTTCTGGAATTTTTCCCCTGTTTTTTTTTCTTTAAGGCTTTTCCCCAC
TTTCCCCTCCATTGGCTTTCCTCTGTCCCCGGCCCCACTGTCACCCCCCC
TTGTTTTTCTTCATATTTCGTCCTTTTTCCCCCCCCTTTTTTTTTTCTCT
CCCTCTCCCCCTCCCTTTTTTTTTCTCCCCCCCCCCCCCCTTTTTTTTCC
CTTTCCTCCTTTTTTTTTCCCCCCCCGCTGACTCCTTTTTTCTCCTTTTC
CTCCTTTCATTTTCTCTTTATCTCTCCCCCCCCCTCTTTTTTTCCCTCCT
TCCCTCACCTTTTTTTCTCCTCCCCCCCCCTGTTTTTTTTCCCCATTTTT
CCTTCTTCTCTTCCCTCTCTTATTTTCTTTTTTCCCCCCCTTTTCTTTTT
CTTTTTTCCCCTCTCTTTTTGTTCCCCCTCCCCTCCTTTTTCCTCTTTCT
CTCTTTTTCTGCTTCCTTCCCCCTCTCGTTTCTCTTCTCCACCCCTTCTC
CATTCTCTTTTCTTTCTCCCCTTTTTTTCTTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGCCACTGAGATAGATCTCCAATCCCCAAT
AAAAACTTTAAAACTAGAACATCAGGACCTAAGTACCCATTTGAAAGGTA
AATAAAAGTATGAAAGCTAGCGAAAGGTTTGATTAGATGATAGGGAAGGC
TTTGTATCATCACATAACCCGAACGTGGACTACTTAGAACAATTTGAGTA
ACTGCAGACATACGTAGTTAGGATAATGACTTATAGATCACATCCTAAAG
CTACGCATATCCTTATGGAAATAAAGGTAGGCAGTTCATAGAACCAGACC
TGATAAGTCTTACCTTTCACCCCAGAACTTGAGAAGCAGTGGCAGAGTGA
TCAGGTGTCTGTGGCAAGTCTGCGACATGAAGTGTTTTCTCACAAGAAAG
AAAAAAGAGGTATTTAAAGGTAGTGATTAAAAGGGGCCCCCCGAATATAA
CTGTACCTCCCCCCCCCATCTTGGTTTACCCTGGGAACCTGGTCCTCTTT
TTTCTTATGCCGCCTTATCTATATTTACCTTACAATGGGGACTATAACCC
CTTTTGCCCTCCTTCCTACCGTATTGTCTCTTCCAATTTCCGGCTTCTCT
TTCTATCGGGTTTCCCCCCCCCCCCCATTTTCTTCCCCTAGACTCTTCTT
CCCTCTTTCCTTGTTCTCATATTCCCTTCCTTTCTCCGTTTTTTGCTTTT
TCCTTTCCCCTTCCCCCCCTTTTCCCCTCTTACCTTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k20.g1 MSMg01no433_k20.g1 CHROMAT_FILE:
MSMg01no433_k20.g1 PHD_FILE: MSMg01no433_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:50 2005
         (375 letters)



>mm_chr7_75937041_75937815
          Length = 775

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagccactgagatagatctccaatccccaataaaaactttaaaactagaacatcaggac 60
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 574 ttagccactgagatagatctccagtccccaataaaaaatttaaaactagaacatcaggac 515

                                                                       
Query: 61  ctaagtacccatttgaaaggtaaataaaagtatgaaagctagcgaaaggtttgattagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctaagtacccatttgaaaggtaaataaaagtatgaaagctagcgaaaggtttgattagat 455

                                                                       
Query: 121 gatagggaaggctttgtatcatcacataacccgaacgtggactacttagaacaatttgag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 454 gatagggaaggctttgtatcatcacataacccgaacatggactacttagaacaatttgag 395

                                                                       
Query: 181 taactgcagacatacgtagttaggataatgacttatagatcacatcctaaagctacgcat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 394 taactgcagacatacgtagttaggataatgatttatagatcacatcctaaagctacgcat 335

                                                                       
Query: 241 atccttatggaaataaaggtaggcagttcatagaaccagacctgataagtcttacctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atccttatggaaataaaggtaggcagttcatagaaccagacctgataagtcttacctttc 275

                                                                       
Query: 301 accccagaacttgagaagcagtggcagagtgatcaggtgtctgtggcaagtctgcgacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 accccagaacttgagaagcagtggcagagtgatcaggtgtctgtggcaagtctgcgacat 215

                         
Query: 361 gaagtgttttctca 374
           ||||||||||||||
Sbjct: 214 gaagtgttttctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)