BAC Information

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BAC

Clone NameMSMg01-433O06
Chromosome7 (Build37)
Map Location 83,999,040 - 83,999,381
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl25, LOC100042210, LOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433O06.T7 (MSMg01no433_o06.b1)MSMg01-433O06.TJ (MSMg01no433_o06.g1)
ACCAG525567AG525568
length812773
length of high quality
(start - end)
77 (71 - 147)380 (70 - 449)
definitionCHROMAT_FILE: MSMg01no433_o06.b1 PHD_FILE: MSMg01no433_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:07 2005CHROMAT_FILE: MSMg01no433_o06.g1 PHD_FILE: MSMg01no433_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGNGACCCACCGCGGA
ATTCCAGATTTTACTTAAAATCTTTCTTTATTCTTCTGAACAATTTATCA
TTGAATAGAGAGTTGTTCAGCCTTCATTGGTATGTGGGTTTTCTGTTGTT
GCGCTGCTATTGAAGTCTAACCTTAATCCATGGCGATCTAATACCATGCA
CGTAATTATTTCAATCTTCTTACCCCAGTTTAGGATCGCTTCCCCACATA
TTATTATCCTCTCCTCCCACCGCACATAAAGATGACCGTATTTTCTCACG
CACCGACAACCCCTCTTTTTTTTTTTTCCACCCAATACCCCAACATTAAC
TGTTTGCCTCTACTTTTCTCTCCTCATTATACTCCCCCCCTTTCCCTCCC
TTCTTTTTTCTCCCCCTCCCTCCCTTTTTGTCTTTTTTTTTTTCCCCCCC
CCCCCCCCCTCCTTTTTCTTCTCCCCCCCCCCCCCTTTCTTTTCTCTCTC
CCCCTTTTTTTCCCCCCCCATGACCCCTTTTTTCACTTTACCTCTTTCTT
TCTTCTCTTTTCCCCCCCACACTTCTTTTTCCCCCTATCCCCTCCTTTTT
TTTCCTCCACCCCCTTATTTTTTTCCCCCTTATCCTTCTTCTTTACCTCT
TTATTTTTTTTTTCTCCCCGCTTCCATTATTACTTTTACCAACCTTTTTT
TTTCCCCCCCCCTTCTTTTCTCCTATCCTTAACTTATCTATTTCTCCCAC
ACTTTTTATTTCTTCCCACCACCTTTCTCATTCCCTTTTTCTCTCTCCCC
CCTTCTTTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAATAAGAGTTGTGAGAATATTATGCAGGT
ACAGAAAATTATAAATATATATAGATGTAAAGTATTTAATGCTTTACCAA
ATAATGTGTTTTTAATTTCAAGAATGTAGAGAGCTAAAATAAAATCTACC
TCAAGGAAAATGGAAAAAAATGATAAAATACAATAAAGCTTATTTAATTT
TGAAATTGTAAATTAATCATTAAAAACTGTGAACAAGCATAAAAGTAAAA
ATAAATTTAATTATATATTCTTTTAAAAGAAAGAAAAATATAAGACACAA
ATATTGAGTATGCCCCACTAATCTAATTAAGGTCATAGGGGTATTAAAAT
ATATATATATATATAAAGAAGGTAATGATATAATTATATTTTAATTACAC
TTACTACATTCCTTAATTTTCTGTGAGACCATACCATACGTGCAATTCAC
TTCCTACTACTCTTCCCTTCACCATCTTCCTTTAAGTTCTCTTCTTTATG
CCTATTACCTAATTAACCTTACCTTACCGTCGTTTATCCCATTTTCCCAC
TTCCTTCCCCTTATTTCACTTTCCTATTCCCTTTTCCTTTCTTACTATAT
TCCCTCTCCGCTTTATCGTATCCTTTCACTTTCCCACCTTTTTCCCTTCC
CATTTCCCCTACTTTCCCCCTTTTTCCATTTCCCTTCCCTTTTCCACCTT
TTTTCCCATTTACTTATCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_o06.g1 MSMg01no433_o06.g1 CHROMAT_FILE:
MSMg01no433_o06.g1 PHD_FILE: MSMg01no433_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:07 2005
         (380 letters)



>mm_chr7_83998956_83999735
          Length = 780

 Score =  600 bits (310), Expect = e-176
 Identities = 334/342 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   taagagttgtgagaatattatgcaggtacagaaaattataaatatatatagatgtaaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taagagttgtgagaatattatgcaggtacagaaaattataaatatatatagatgtaaagt 367

                                                                       
Query: 65  atttaatgctttaccaaataatgtgtttttaatttcaagaatgtagagagctaaaataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atttaatgctttaccaaataatgtgtttttaatttcaagaatgtagagagctaaaataaa 307

                                                                       
Query: 125 atctacctcaaggaaaatggaaaaaaatgataaaatacaataaagcttatttaattttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atctacctcaaggaaaatggaaaaaaatgataaaatacaataaagcttatttaattttga 247

                                                                       
Query: 185 aattgtaaattaatcattaaaaactgtgaacaagcataaaagtaaaaataaatttaatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 aattgtaaattaatcattaaaaactgtgaacaagcataaaagtaaaagtaaatttaatta 187

                                                                       
Query: 245 tatattcttttaaaagaaagaaaaatataagacacaaatattgagtatgccccactaatc 304
            | |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 186 caaattcttttaaaagaaagaaaaatataaggcacaaatattgggtatgcctcactaatc 127

                                                     
Query: 305 taattaaggtcataggggtattaaaatatatatatatatata 346
           |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 126 taattaaggtcataggggtattaaaatacatacatatatata 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)