BAC Information

Click to search

BAC

Clone NameMSMg01-434A01
Chromosome7 (Build37)
Map Location 109,307,089 - 109,307,656
singlet/doubletsinglet
Overlap geneNup98
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434A01.T7 (MSMg01no434_a01.b1)MSMg01-434A01.TJ (MSMg01no434_a01.g1)
ACCAG525653AG525654
length727726
length of high quality
(start - end)		573 (39 - 611)510 (71 - 580)
definitionCHROMAT_FILE: MSMg01no434_a01.b1 PHD_FILE: MSMg01no434_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:16 2005CHROMAT_FILE: MSMg01no434_a01.g1 PHD_FILE: MSMg01no434_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
ATTTATTCACGGCTTCACAGAGAAAAAGAAAAGTTAAAGGTCAGGTTGAG
AAGAATCTGTACTTCTTTTTTAATTTCTTATAAGAATTGTTTCTGGATAT
AGAACAAATAATAGAATAGTTTGAAAGAGATAAAATAAGAAAGAATATGG
AAGAATTAATGTTAAGCATAGGAAAATCCACATAAATGATGCGTTAAACT
AGGCACCATTGAGTTATCCATGGGAAAGGCCCTGAAGCAATGTCAGATTG
CTGACATTGAGAGACGGGACATCTCAATTCTGGGTTGCTTATTCTCGATA
TGCAGTTAGATAGACACAGGTAGGCACACAAACATTTTTTTAAAGGCAGT
AGTAGTTTTTTAATTGCAAAAGTGTATGTTTTATTTTTAGTTCCTTACTT
AGAATTCTTTGTTGGTAAATGATAAGTTCATTACAGCTCCTTTTCTTACA
AATAAATACGGGTTGGGAAAAGCTGAGTGTTGGTGCACACCTTTGTTCCA
GCACGGAGGGAGCAGAAGCAGGTGGCTCTCTGTGTTCCCAGTTCCAGGAC
AGGACAGCCAGNGCTACACAGAGAAATCTTTTTTTGAATAAACAAAATAA
AAAAGGGGTCAGGGTGTGACTATGGTAGGCTCAGTGGTTTAGTGGACTCT
TTGCTCTTGAAGAGGATCTAAGAGATN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCTGTGTAGAAATTTTTGCACTATGAGCA
TCAAGCCCCTGAATTTATTTATTATTATTGTTATTCTTATTGTTATCGTC
ATCCCTGAAACAGGGTTTTTCTGTGTATCCCCGGCTGTCCTAGAACTCAT
TTTATAGACCAGGTTGACTTCAAACTCAGAGATCCACTGCCTTTGCCTCC
CAAGCGCTGGGATTAAAGTTTTGAGTCACCACTGCCTGCCTGGTGAGTGA
GCCCTTGGATTTATTTTGGAAAAAAAAAGGAGACTCCTTGTTTTAAACAT
TTATTTTTCTGTGCATTGGTGTTTTGCCTGCATGTATGTCTGTGTGAGGA
TGAAGATGAAGATTCCCCTGGAACTGGAGTTACAGACAGTTAGGAGCTGT
CATGTGGTTGCTGGGAATTGAACCCTGGTCCTCTAGAAGAGTAGCCAGTG
CTTTTAACCACTGAGCCATCACTCCCCCTGGGACTATTAAGGATAGTGAC
TTGGGACTGCTAATAGGACTTCTGAAGGAGACTAACTCATAACAGCTCAG
AGTGTAAACACTAGAAAGAGATCTACTGCTCTCAGTCACTGCACCTTTGT
TTGGCTTCTAGATGATAATGCTGTTTTTATATCAGTCCTCCTTGAGCTCC
ACAAACCTCTCGGAACGGTTACAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_a01.b1 MSMg01no434_a01.b1 CHROMAT_FILE:
MSMg01no434_a01.b1 PHD_FILE: MSMg01no434_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:16 2005
         (573 letters)



>mm_chr7_109306885_109307856
          Length = 972

 Score = 1038 bits (537), Expect = 0.0
 Identities = 561/569 (98%), Gaps = 1/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaatttattcacggcttcacagagaaaaagaaaagttaaaggtcaggttgagaa 64
           |||||||||||||  || |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 772 gaattccaatttagccagggcttcacagagaaaaagaaaagtgaaaggtcaggttgagaa 713

                                                                       
Query: 65  gaatctgtacttcttttttaatttcttataagaattgtttctggatatagaacaaataat 124
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gaatctgcacttc-tttttaatttcttataagaattgtttctggatatagaacaaataat 654

                                                                       
Query: 125 agaatagtttgaaagagataaaataagaaagaatatggaagaattaatgttaagcatagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agaatagtttgaaagagataaaataagaaagaatatggaagaattaatgttaagcatagg 594

                                                                       
Query: 185 aaaatccacataaatgatgcgttaaactaggcaccattgagttatccatgggaaaggccc 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 593 aaaatccacataaatgatgcgttaaactaggcaccattaagttatccatgggaaaggccc 534

                                                                       
Query: 245 tgaagcaatgtcagattgctgacattgagagacgggacatctcaattctgggttgcttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgaagcaatgtcagattgctgacattgagagacgggacatctcaattctgggttgcttat 474

                                                                       
Query: 305 tctcgatatgcagttagatagacacaggtaggcacacaaacatttttttaaaggcagtag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tctcgatatgcagttagatagacacaggtaggcacacaaacatttttttaaaggcagtag 414

                                                                       
Query: 365 tagttttttaattgcaaaagtgtatgttttatttttagttccttacttagaattctttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tagttttttaattgcaaaagtgtatgttttatttttagttccttacttagaattctttgt 354

                                                                       
Query: 425 tggtaaatgataagttcattacagctccttttcttacaaataaatacgggttgggaaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tggtaaatgataagttcattacagctccttttcttacaaataaatacgggttgggaaaag 294

                                                                       
Query: 485 ctgagtgttggtgcacacctttgttccagcacggagggagcagaagcaggtggctctctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctgagtgttggtgcacacctttgttccagcacggagggagcagaagcaggtggctctctg 234

                                        
Query: 545 tgttcccagttccaggacaggacagccag 573
           ||| |||||||||||||||||||||||||
Sbjct: 233 tgtgcccagttccaggacaggacagccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space:   541606
Effective search space used:   541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |