BAC Information

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BAC

Clone NameMSMg01-434C08
Chromosome7 (Build37)
Map Location 94,709,140 - 94,709,385
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434C08.T7 (MSMg01no434_c08.b1)MSMg01-434C08.TJ (MSMg01no434_c08.g1)
ACCAG525763AG525764
length770740
length of high quality
(start - end)
117 (38 - 154)249 (66 - 314)
definitionCHROMAT_FILE: MSMg01no434_c08.b1 PHD_FILE: MSMg01no434_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:28 2005CHROMAT_FILE: MSMg01no434_c08.g1 PHD_FILE: MSMg01no434_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCCCA
CTTTATTTCGCATGCTATTTAGCATATGTTGAGGTCCTTAATCCACTTGG
ACTGAGTTTAATGCAGGGTGATAAATATGAATCTATTTTCGTTCTTTTAC
ATGCAGAGAAGCAATTAGGCCTACACCGTTTACTGAAGATGCTTTCTTTT
TTCCGTTGCATGATTTTGGCTTCTTTATCAAAAATCAAGTGTTCATAGAT
CTGTGAATTTATTTATGAGACTTAGATTTTATTTCATTTATCAACCAGAC
TGCTTCTGAATTAATAATTTGTATTTTTTACCCACCCCCCTCTTGATCTG
GAGTATAGCTTGAGGTCAGGGACAATGATTCCTCCTGAAGTTCTCCAATA
CTTCATGATTGTTTTGACTATCGCGCACTTTGTAGTTGCCGCTGTTGCTT
TTTTCTACCTTTATCTATGTTCAATATTTTCAACTTTCTACTCTTCTTCC
ATTTTTACTCTTTCCATCTTTTCCCCTTCTTCAACTTTATCATTTCACTC
CCTTTTCACCTCTTCGTACGCCCTCTTCTATCTATTTTTCCTTTTACTTC
CTTTTTTTCAACTTTTTACACTTTTTAAAACATCCTTTCCTTCTTCTTTC
TCTCCATTTCCTACCCTTTTTCTTCCCTCTTTACTTTAAATCCCTTTCTT
CCATCTTTCCTCATTCTCTTCCTTCACTACCTTGCTTCATTCATTTTTCT
ATACTCCATTATTTACTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACAGTTCCTAGGACATATATCATATGGCTCATAATCACCT
GAAATGCCTTTTCTCAAAGATCTGACATCTTCAAGTATACACACACACAT
TCTATATACTCATATAGATACATACAGACATATATGCTTACCTATAAATA
AAAATAAATATTTTCTTCAATTGTTCATAAGTCAAGTAGCAGTACATTGT
AAAGCGATGATCATATGAGCCATAACGAATTCTCTGGAGAGCTATAAATA
TTACTGAGTAATTGTTTTTTCAACATACTCTACTTGTGGCGTACAGAATG
GGTACATTTGTCTGACACAAGCCCAGTAAGTCATCATATATCAGTGTGAC
AGAAAAGAAAATTTCTAAGAGGAGTCCAAGGAAAGTATAACAAACCCAAT
TAATTCTCACACAAAAGCCAAACATGCATAATGGTGAACACACCTAGAAC
ATCTATATCTTTTCTCCTCATTTTTAAATCCCTACAAATAATTAATCACT
ATATGACTTGACCTCTAAGTGAAGTCTCCTTGTTTGATCTTCTCTGTAAT
CTGAAGCTATTTCTGACATTGTTGCTTTGCCTTATCCCGTCAATCGCATA
GCTCTTTGTCTAATTTATTTCTGAACGTAAAAATCCTTGGCATCTTCAAA
TTCTTGCAACTTGACCTTAGACAAATTTTATTTTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_c08.g1 MSMg01no434_c08.g1 CHROMAT_FILE:
MSMg01no434_c08.g1 PHD_FILE: MSMg01no434_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:28 2005
         (249 letters)



>mm_chr7_94708795_94709443
          Length = 649

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctaggacatatatcatatggctcataatcacctgaaatgccttttctcaaagatctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcctaggacatatatcatatggctcataatcacctgaaatgccttttctcaaagatctga 532

                                                                       
Query: 61  catcttcaagtatacacacacacattctatatactcatatagatacatacagacatatat 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 531 catcttcaagtatacacacacaaattctatatactcatatagatacatacagacatatat 472

                                                                       
Query: 121 gcttacctataaataaaaataaatattttcttcaattgttcataagtcaagtagcagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gcttacctataaataaaaataaatattttcttcaattgttcataagtcaagtagcagtac 412

                                                                       
Query: 181 attgtaaagcgatgatcatatgagccataacgaattctctggagagctataaatattact 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaagtaaagcgatgatcatatgagccataacgaattctctggagagctataaatattact 352

                 
Query: 241 gagtaa 246
           ||||||
Sbjct: 351 gagtaa 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)