BAC Information

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BAC

Clone NameMSMg01-434E21
Chromosome7 (Build37)
Map Location 136,738,620 - 136,739,062
singlet/doubletsinglet
Overlap geneBrwd2
Upstream geneEG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434E21.T7 (MSMg01no434_e21.b1)MSMg01-434E21.TJ (MSMg01no434_e21.g1)
ACCAG525881AG525882
length728762
length of high quality
(start - end)
597 (38 - 634)443 (70 - 512)
definitionCHROMAT_FILE: MSMg01no434_e21.b1 PHD_FILE: MSMg01no434_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:41 2005CHROMAT_FILE: MSMg01no434_e21.g1 PHD_FILE: MSMg01no434_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTATACGACTCCTATATTCAGAGGATGCGCGGAATTCTCTGG
ACATACCCGGATGGTGCCAGCTGGCTCCTGGCTGCATGTGATACATTTAT
GGAGAGAGAAAGGGAGCTAGAGGGGATACAAGGAGGGAAGAAGCAAAGCT
CGGAGGAAATAGAAAAGACCCAGGACATGTGTGGCTGGAAATGAAACTCA
CTCTCACTCCAAGGACATGCACTCCCTAAACCAGCTAGCAGAAAACTCCC
CGAGGGAGACAAGGGCTGCAGAGCCTGTGACTGTTAGAACCCTCAGGAAG
ACTTCAGCAAGATCTTTTTTTGAAAGGCTCCTGAGTATCATCATATTGTT
TAAGACATCCCAATTAGGACCGGAAGGGGCTCAAAGACAGTCCAAGATGA
AAGCAAATCTTTGGACCCTCAATTTCACTGGGCAGGAAGCGGGCAGCTGT
AGAAGCACTGCATTTTTTGTAGGAAAGAAAGAATAACTCAGGGGCAGAGC
CAAAGTCCCAGAGCCTAGGGAAGCTTCAGGCTATGGCACCTCCATGGAAA
GGGTTGCCCGAGTTGAGAACTATTTCATACTCCTAAAGTAGGGAAACTGG
CTGTGTGTATCTGGCTAGATTTCAGAATGAAATAAACCAGCAACTGTATA
GGCCTCTGATTGACCCTGCCCCCAGTTGATGGGAATGGGTCATCTAGGTT
GCTGTACCTATTGGAATGTTGAAGCTTN
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTACCAACAGCTGCATCTCTGAACAGAGCT
ACTTCACACTTTTTTTCTGGTTAGGCACATTGTAACCTCTTGCATGCAGC
CACAGTAAGGAGCAGTATGCTAGGGACCATTTTAAATAAGATAGCAAAGA
AAAAGCCCAAATATAGAAAACAGTGGTAAAGCTCTGAGATGGACATTTAT
TTGCACCGTTAGGAGTGAAGTAAGGATTCCTTATTGTCCCACAGCTGGTT
GCATGCATGTGTTGGTCAACTCTGGTTAGTCACCAGTCTGTCCTTGTCTG
CAAATGCCCTGTACGTATTGGCTTTGAGGTTATAAACACATGATATCAGG
TAGCTGAGTTCATATTTGCAAACTCCATACAATATAAGTTATTAGATTTA
CCTGTATGTAGTCAGTATACATAATACACATGGTATTCAAATGTAAATAT
ATACATATGTATACACACACACACATGTACACATTTATTAAAAAGAGTTT
ACCTGAGAAGTTTAAAGACCAGGAAAATTAGTATTCCGAAAACTTTATTT
TCCTCTTCTCCAAAATTCCTATTGAGAGTTGTGGGATTTCTTTTCAACTT
TGGAATTCCCAACCATGGGTGTTTTCCAGGGGCGCCCCCCTTTTTTGGAA
GACCCAGGTTTCCGGTAATTTGAAAAATCCAAAAAGGTTTACCTATTATA
ACCCTGGAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_e21.g1 MSMg01no434_e21.g1 CHROMAT_FILE:
MSMg01no434_e21.g1 PHD_FILE: MSMg01no434_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:41 2005
         (443 letters)



>mm_chr7_136738420_136739262
          Length = 843

 Score =  841 bits (435), Expect = 0.0
 Identities = 441/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaccaacagctgcatctctgaacagagctacttcacactttttttctggttaggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaccaacagctgcatctctgaacagagctacttcacactttttttctggttaggcaca 260

                                                                       
Query: 61  ttgtaacctcttgcatgcagccacagtaaggagcagtatgctagggaccattttaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaacctcttgcatgcagccacagtaaggagcagtatgctagggaccattttaaataa 320

                                                                       
Query: 121 gatagcaaagaaaaagcccaaatatagaaaacagtggtaaagctctgagatggacattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagcaaagaaaaagcccaaatatagaaaacagtggtaaagctctgagatggacattta 380

                                                                       
Query: 181 tttgcaccgttaggagtgaagtaaggattccttattgtcccacagctggttgcatgcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcaccgttaggagtgaagtaaggattccttattgtcccacagctggttgcatgcatg 440

                                                                       
Query: 241 tgttggtcaactctggttagtcaccagtctgtccttgtctgcaaatgccctgtacgtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tgttggtcaactctggttagtcaccagtctgtccttgtctgcaaatgccctgtacatatt 500

                                                                       
Query: 301 ggctttgaggttataaacacatgatatcaggtagctgagttcatatttgcaaactccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctttgaggttataaacacatgatatcaggtagctgagttcatatttgcaaactccata 560

                                                                       
Query: 361 caatataagttattagatttacctgtatgtagtcagtatacataatacacatggtattca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 caatataagttattagatttacctgtatgtagtcagtatacataatacacgtggtattca 620

                                  
Query: 421 aatgtaaatatatacatatgtat 443
           |||||||||||||||||||||||
Sbjct: 621 aatgtaaatatatacatatgtat 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)