BAC Information

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BAC

Clone NameMSMg01-434M23
Chromosome7 (Build37)
Map Location 81,418,490 - 81,418,897
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979
Downstream geneSlco3a1, EG665308, EG665641, 0610006L08Rik, Sv2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M23.T7 (MSMg01no434_m23.b1)MSMg01-434M23.TJ (MSMg01no434_m23.g1)
ACCAG526263AG526264
length756765
length of high quality
(start - end)
408 (40 - 447)415 (70 - 484)
definitionCHROMAT_FILE: MSMg01no434_m23.b1 PHD_FILE: MSMg01no434_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:20 2005CHROMAT_FILE: MSMg01no434_m23.g1 PHD_FILE: MSMg01no434_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATGCGCGGAATTCCAC
TGGATTTCCTTAGCTCCCTTGTCAACATCAAGTGACCATAGGTGTGTGGA
TTCATCTCTGGGTCTTCAATTCTGTTCCATCTGCTAAATGCATGAAACTC
AAGAAGAACAAAGACCAAAGTGTGGACATTTTGCCCCTTCTTAGAACTGG
GAACAAAACACCCATGGAAGGAGGTACAGAGACAAAGTTTGGAGCTGTGA
CGAAAGGATGGACCATCTAGAGACTGCGATATCTGGGGATCCATCCCATA
ATCAGCTTCCAAACGCTTATTTCTATTGCATACACTAGCAAGATTTTGCT
GAAAGGACCCAGATATAGCTGCCTCTTGTGAGACTATGCCGGGGCCTAGC
AAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGAGCC
CGCAATGGAGGAGTTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAA
CCCAATAGGTGGAACAACATTATGAATTATCCAGTATCCCAGAGCTCTTG
ACTCTAGCTGCATATGCACTAAAAGATGGCCTACCTGTTCATCACTGGGA
AAGAAAAGTCCTATTGTACTTTCTATAACTTAATTTGTCCCCAGTATAGT
GGGCATTGACTAGTTTTCATTATTTTGTTTAGATCAACGCCGTATCGTGG
TTCCTCATATTGTCTCTTTGCCATACTTGTTTTTTCTGATTATCTCTTAC
TCTTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAGAAGCCAAAGAATGAACCTGCTTTGAA
TCTAGTTGAATGAAACGCTACGTGTGTGACTAGCACACAAGAGACTGGGG
CAAAGGTGAAATTGAACCTCATGATGGATGAATGTATATTTGGTTCTAGA
CCACAGTCACCCATTCTGATAGGACATGCAGAAGATCTTTGGGGTCTGCC
ATCTCTCTTCTCTGAATAATTTGGACAACCCCTGTGACTGGACAACCCCT
GTGACTAGATCTCTTGTGGATTGTTAACTTGCAAAGTGTTAGTTAGTATC
CTGACTACAAATAAAAAACAGTGGTTTAAAAGATTAAATGAAGGGTAGGA
AATTCTTTCTGTAAGTTCCCAAGAGTACCACCAAAACAATAACATCAAAA
CCCCAATAAACAAATGAACCAAACAGCAACACCCTGGGGGACCACATGTG
CTGACACCTCAAGGAACAGCTAGCTCTCTGACTTCTTCTGCATCCACTGA
CTTTTCCGAAGTGAAACCCGCTCCCTTAGGAAGGAAACACTACCCCCTTT
TTTCGGTGGATCAGGAACTTTTCCTGGCAGGAAAAAGAGTGGTGAAAATT
TCATTTCCTTGGGGCTTTTTATCCCAAAAAATAAAAAAATAGTTGGCTCC
CCACGAATAAAAAAATCCCCCTCTTATCTTGGGGGTGTGTTAAAAGATAC
TACAAAAACCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m23.g1 MSMg01no434_m23.g1 CHROMAT_FILE:
MSMg01no434_m23.g1 PHD_FILE: MSMg01no434_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:20 2005
         (415 letters)



>mm_chr7_81418290_81419097
          Length = 808

 Score =  768 bits (397), Expect = 0.0
 Identities = 408/415 (98%), Gaps = 7/415 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagaagccaaagaatgaacctgctttgaatctagttgaatgaaacgctacgtgtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||    |   ||||
Sbjct: 201 agtagaagccaaagaatgaacctgctttgaatctagttgaatgaaacg----g---gtga 253

                                                                       
Query: 61  ctagcacacaagagactggggcaaaggtgaaattgaacctcatgatggatgaatgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctagcacacaagagactggggcaaaggtgaaattgaacctcatgatggatgaatgtatat 313

                                                                       
Query: 121 ttggttctagaccacagtcacccattctgataggacatgcagaagatctttggggtctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttggttctagaccacagtcacccattctgataggacatgcagaagatctttggggtctgc 373

                                                                       
Query: 181 catctctcttctctgaataatttggacaacccctgtgactggacaacccctgtgactaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catctctcttctctgaataatttggacaacccctgtgactggacaacccctgtgactaga 433

                                                                       
Query: 241 tctcttgtggattgttaacttgcaaagtgttagttagtatcctgactacaaataaaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctcttgtggattgttaacttgcaaagtgttagttagtatcctgactacaaataaaaaac 493

                                                                       
Query: 301 agtggtttaaaagattaaatgaagggtaggaaattctttctgtaagttcccaagagtacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agtggtttaaaagattaaatgaagggtaggaaattctttctgtaagttcccaagagtacc 553

                                                                  
Query: 361 accaaaacaataacatcaaaaccccaataaacaaatgaaccaaacagcaacaccc 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 accaaaacaataacatcaaaaccccaataaacaaatgaaccaaacagcaacaccc 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 808
Length adjustment: 9
Effective length of query: 406
Effective length of database: 799
Effective search space:   324394
Effective search space used:   324394
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)