BAC Information

Click to search

BAC

Clone NameMSMg01-434N09
Chromosome7 (Build37)
Map Location 151,696,859 - 151,881,038
singlet/doubletdoublet
Overlap genePpfia1, Fadd, Tmem16a
Upstream geneNap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn
Downstream geneLOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434N09.T7 (MSMg01no434_n09.b1)MSMg01-434N09.TJ (MSMg01no434_n09.g1)
ACCAG526283AG526284
length750744
length of high quality
(start - end)		295 (59 - 353)418 (69 - 486)
definitionCHROMAT_FILE: MSMg01no434_n09.b1 PHD_FILE: MSMg01no434_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:22 2005CHROMAT_FILE: MSMg01no434_n09.g1 PHD_FILE: MSMg01no434_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,696,859 - 151,697,151)(151,880,621 - 151,881,038)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGATATG
ACAATGTCCTTCAGGGCTGTTTCTTCAAAATGTTCCATGTAATACACTGG
CTACTCTTGCTTAAACTAGAGAGCAGCCCTGAAGGAAGGGCTTGGTCATG
GAAAGCACCAAAAGCAGGGAGGGCCACAGCCCAGTCAACCAATACCAAGC
ACGAATGAGGTCAGATGCTGCTGTGTCTGTTCCTGTGTGTGCAACCTGTG
TCTTCCTACAGCAGGCCTGCCACACTCAGTGCCATGCTCAATGGTGCAAG
GGTTTTTGTTGTTGCTGCTTAGCTTTTTAGGTTTGTTTTTCTGTTTGTTT
GCTTAAGACAGTCTTGTTCTGTAGACCAGAGCAGCCTGAGACCTGCAGTA
ATCCTCCTGATTTATCATCTGATATGACTAGTATGAGCCATCTTACTTGA
CCTTCATATTTGTTTTCATAACTTCCTGCATATGTTCTATAGTGATTTTT
ATATTTTAGTACTCACTGTCCACTTAACAAACATTTTTGCCTACTTTTTA
TTGTTATGTTTATCACTTCTTTTTTCTCTTTCAACTCCTGTATCCCCTCC
TTTCCCGCTATTTCTCTTATTTTTGAATTCTCATCCTCCATTCATCCTTC
TTTATATATTCTATCATACTATCTAATTCGTATTTTCCATTCCCTCTCTC
ATTTTCTATTTTTTCTTCCCTCCCTTATTTATCAATGTATCTTTTTTCCN


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATTTTGAACCCAGGCCACAAATAACCCTAC
CCAGGACAAAGATCCTATAGGGCCTCCTCCCTGGGTCTGTCCTCCCAAAG
GCAGATCACAGCACAGCACACAGGGAGGCCCAGTGGGGAGAAGCCTGAGG
ACAGCTGGGGTAAGGAATAGGTGTCTGTGACACAGCATGTATATGCTGGC
TCCTGGCAGCACTGGTTGGCAAAGGAGAGTTAAAAGTAGACACAGCACCC
TCACTAACTTATCAGTACTCCAGGAGACATACTATGCTTGAGTGGAGCCT
TTCTGTCATAGGAAGTTGTATCTGTGTGTGTGTGCATTTGTGTGTCTGGT
GCCTGTGTGTAAACCTATGCATATGAGTGTGGGGTGGGTGCATATGCATG
TGTGAATATGTGCATGTATGTGTGCATGTGTTTGAGGTGGTGTGTTTGTG
TNNTTNATTATNNTTTTGTNTTTTTAGTTAAGATTTTTTTTGGTTTTTTT
TGTTTCTCTTCTTCTCCTACTTTTCATCTCTTCTTACTACCTTTTCCCTT
CCTCATGATTTTACTTCCATTCTTCTTCCTACGCTTTTCCTCTCCTCTTC
CCTCCTTTACTCTCTTTCCTTCCCCTCTCTTCTTTTTGCTCCTACCTTTT
TTTTTTTAAGTCATCTTTCCTTACCTCTTCTCTCTCTCCCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_n09.b1 MSMg01no434_n09.b1 CHROMAT_FILE:
MSMg01no434_n09.b1 PHD_FILE: MSMg01no434_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:22 2005
         (295 letters)



>mm_chr7_151696659_151697353
          Length = 695

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagggctgtttcttcaaaatgttccatgtaatacactggctactcttgcttaaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagggctgtttcttcaaaatgttccatgtaatacactggctactcttgcttaaacta 260

                                                                       
Query: 61  gagagcagccctgaaggaagggcttggtcatggaaagcaccaaaagcagggagggccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagcagccctgaaggaagggcttggtcatggaaagcaccaaaagcagggagggccaca 320

                                                                       
Query: 121 gcccagtcaaccaataccaagcacgaatgaggtcagatgctgctgtgtctgttcctgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagtcaaccaataccaagcacgaatgaggtcagatgctgctgtgtctgttcctgtgt 380

                                                                       
Query: 181 gtgcaacctgtgtcttcctacagcaggcctgccacactcagtgccatgctcaatggtgca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtgcaacctgtgtcttcctacagcaggcctgccacactcagtgtcatgctcaatggtgca 440

                                                                
Query: 241 agggtttttgttgttgctgcttagctttttaggtttgtttttctgtttgtttg 293
           |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtttttgctgatgctgcttagctttttaggtttgtttttctgtttgtttg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no434_n09.g1 MSMg01no434_n09.g1 CHROMAT_FILE:
MSMg01no434_n09.g1 PHD_FILE: MSMg01no434_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:22 2005
         (418 letters)



>mm_chr7_151880450_151881267
          Length = 818

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattttgaacccaggccacaaataaccctacccaggacaaagatcctatagggcctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctattttgaacccaggccacaaataaccctacccaggacaaagatcctatagggcctcct 530

                                                                       
Query: 61  ccctgggtctgtcctcccaaaggcagatcacagcacagcacacagggaggcccagtgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ccctgggtctgtcctcccaaaggcagatcacagcacagcacacagggaggcccagtgggg 470

                                                                       
Query: 121 agaagcctgaggacagctggggtaaggaataggtgtctgtgacacagcatgtatatgctg 180
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 469 agaagcctgaggacagctggggtaaggaatcggtgtctgtgacacagcttgtatatgctg 410

                                                                       
Query: 181 gctcctggcagcactggttggcaaaggagagttaaaagtagacacagcaccctcactaac 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gctcctggcagccctggttggcaaaggagagttaaaagtagacacagcaccctcactaac 350

                                                                       
Query: 241 ttatcagtactccaggagacatactatgcttgagtggagcctttctgtcataggaagttg 300
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tcatcagtacgccaggagacatactatgcttgagtggagcctttctgtcataggaagttg 290

                                                                       
Query: 301 tatctgtgtgtgtgtgcatttgtgtgtctggtgcctgtgtgtaaacctatgcatatgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tatctgtgtgtgtgtgcatttgtgtgtctggtgcctgtgtgtaaacctatgcatatgagt 230

                                                                     
Query: 361 gtggggtgggtgcatatgcatgtgtgaatatgtgcatgtatgtgtgcatgtgtttgag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gtggggtgggtgcatatgcatgtgtgaatatgtgcatgtatgtgtgcatgtgtttgag 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |