BAC Information

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BAC

Clone NameMSMg01-435B22
Chromosome7 (Build37)
Map Location 16,113,175 - 16,113,539
singlet/doubletsinglet
Overlap genenone
Upstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762
Downstream geneObox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B22.T7 (MSMg01no435_b22.b1)MSMg01-435B22.TJ (MSMg01no435_b22.g1)
ACCAG526498AG526499
length778770
length of high quality
(start - end)		586 (40 - 625)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no435_b22.b1 PHD_FILE: MSMg01no435_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:44 2005CHROMAT_FILE: MSMg01no435_b22.g1 PHD_FILE: MSMg01no435_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAACTAACTTTCCAGAAAAGAACTTTAAAGTTGTCCTTTCAGAGCAAATT
TAAATTTGGGCATGTGGATCCAGAAAAAAACACCTTCCTTTGCCTTTCAG
GGTGGCTCAAATACAGAATTTAAGTCAATCAAGGATTGATATATTGTAGA
GATCAGGAAATCAAGGCCCATTCCTAAACATCCTTGAATCAAATTACTGC
AAACAAACATCCAATATCAGATTAAATGTAGTGATACTTGAAGCAATCAC
TTAAATCAGGGACAAGACAATGATGCACACTCTCCCCATATATATTCAAT
ATAGTACTCAAAGTTCTAACTAGAGCATTTAGACAATAAAAAGGTATCAA
GGGGATGGCAAAGAAGAATTAAAGTTATCACTGATTGCAGATGATATGAG
TGTCCATGAGTGACCCAAAAATACTAACAGAGAACTTCTACATCTGATAA
ACAGCAAAGTGACTGAATGTGAAATTAACTCAAATAAATCATTAGCTTTC
TTTATACCAGTGATAAACAGGCTGAGAAAGACATTGGGAAACATCATCCT
TCACACTAGTCACAAATAATATAAAATCTTACGGTAACTCTNACCAAACA
AATGAAAGATCTATATGANCATGACATCAAGTCTCTCCAGAANAAATCAC
GAAAGAATCCGATTATGGAGAGACTTCCCATGCTCATGCACTGGGAGAAT
TATATAGTAAAACTGGCCATCTACTAAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGTTTCTAATGAGTGCTCTCAGGTATTTT
ATCACTCTCTCCTGGCAGTATTTGGGTATGGAAAGCTGTTGCACAGGGTC
AGCTCAGGCAGAGATGGAAACTGGAAGTCATATACTTCTTTTTAATGGCT
TAATAGTATTCCATTGTCTAAATGAACCACATTTTCTGTATTCATTCTTT
GGTTGAGGGACATCTGGTTTCTTTCCAGTTTCTGACTATTATGAATAAAG
TTGATATGATGTTGAGCAAATGTCCTTGTTTGATGGTGCAAGATCTTTTG
AGTATATCTCCAAGAGTGGTGTAGCTGGGTCTTGAGGTAGAATTATTCCC
AATTTTCTTAGAACTGGAATGTGGGAACAAAAAGGGAGTAAGAGAAGGAT
GTTGGAGGTATAACTCTCTTTTTCTCCCTCCTTTTTCCCCCTTCTCCCCC
CCTTTTCTTTCCCTCCTCTCCCTTTTCCTTTTTTTTTCTCTTTTTCTCTC
TCTCCTATTTATTTTCACTCCTTCCTTTTTCTTCTTATCTCTTTTCCACC
CCCTAATTTTTTTTTCTTCTCTCTTTTAATCAACCTTCTTTTATTTTTTT
TTGCACATTTTTCCTCTTTTCCAACCCCCCCCTTTCTTTCCCTTTTTTTT
CTTCCTCTTTCTTACCCCTCTCTCTTTTTTTATCTCCTTCTTTTTCCCCC
TTTAATATTCCCTTCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b22.b1 MSMg01no435_b22.b1 CHROMAT_FILE:
MSMg01no435_b22.b1 PHD_FILE: MSMg01no435_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:44 2005
         (586 letters)



>mm_chr7_16113175_16114161
          Length = 987

 Score =  543 bits (281), Expect = e-158
 Identities = 345/367 (94%), Gaps = 5/367 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaa-ctaactttccagaaaagaactttaaagttgtcctttcagagc--aaatt 61
           ||||| |||| | ||||||||||||||||| |||||| |||||||||||||||  |||||
Sbjct: 365 gaattgaaaagc-aactttccagaaaagaattttaaaattgtcctttcagagcagaaatt 307

                                                                       
Query: 62  taaatttgggcatgtggatccagaaaaaaacaccttcctttgcctttcagggtggctcaa 121
           ||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||| |
Sbjct: 306 taaatttgggcatgtggatcca-taacaaacaccttactttgcctttcagggaggctcta 248

                                                                       
Query: 122 atacagaatttaagtcaatcaaggattgatatattgtagagatcaggaaatcaaggccca 181
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 atacagaatttaagtcaatcaaggattgatatattggagagatcaggaaatcaaggccca 188

                                                                       
Query: 182 ttcctaaacatccttgaatcaaattactgcaaacaaacatccaatatcagattaaatgta 241
           |||||||||||||| ||| ||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 187 ttcctaaacatcctagaagcaaattactgcaaacgaacatccaatagcaaattaaatgta 128

                                                                       
Query: 242 gtgatacttgaagcaatcacttaaatcagggacaagacaatgatgcacactctccccata 301
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gagatacttgaagcaatcacttaaatcagggacaagacaatgatgcacactctccccata 68

                                                                       
Query: 302 tatattcaatatagtactcaaagttctaactagagcatttagacaataaaaaggtatcaa 361
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 67  tatattcaatatagtactcaaagttctaactagagcattaagacaataaaaagggatcaa 8

                  
Query: 362 ggggatg 368
           |||||||
Sbjct: 7   ggggatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space:   562752
Effective search space used:   562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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