BAC Information

Click to search

BAC

Clone NameMSMg01-435C18
Chromosome7 (Build37)
Map Location 125,121,173 - 125,145,154
singlet/doubletdoublet
Overlap genenone
Upstream geneXylt1, LOC669758
Downstream geneRps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435C18.T7 (MSMg01no435_c18.b1)MSMg01-435C18.TJ (MSMg01no435_c18.g1)
ACCAG526538AG526539
length789776
length of high quality
(start - end)		424 (62 - 485)462 (71 - 532)
definitionCHROMAT_FILE: MSMg01no435_c18.b1 PHD_FILE: MSMg01no435_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:48 2005CHROMAT_FILE: MSMg01no435_c18.g1 PHD_FILE: MSMg01no435_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,144,848 - 125,145,154)(125,121,173 - 125,121,634)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTAGATTATCCATAGCAAAAGTATAAGCACACACATTTTCTCTGTTTTGC
CCTCCTCCTCTTCTTTTCCCTCCTCTTCCTCCTTACCCTCTTATTCTTCC
TTCTATGTCTTTTCCTTTTTATTGTTTTTCTTTTTCCTCTTCCCATTCTC
CTCCCAACCTTATCCTTTTCCTTCCTCCTCTTCATCCCATCTCTCCTCCT
CTTCCTCTTTTTCCTTTTCCTCCTTTTCCTTCTCTCTCTTAATCTCTTCC
TTTTTGTTTGATGATTGTTAAATAGGGTCTTGTTGTGTAGCCCAGGCTGG
CTTTGAACACCTCATGCCACAGGCACCCTCTCCCCACCCTTGACATTCTT
TTGGTATCTTTTTAACCTGGAATTCCCTTGCAGATGTGTGAATGAGTTAT
TCTATTTGGGATCCCCATCCGTATACACCTCGGCTTGTTCAGCACCAGGG
ACAGCGCCCAGCTACTCCAGTCTCTTCTCCCCTGATGTCCAGCATTAGAC
AAAGAAGTGTGCATTTATATGGCGTCTGTTTTTTTAAAATATTGAGGTCC
CCCGCCCTTCCTTTCCTTACTCTCTGACTAACCCTTAAACGTTTTCCCTT
CCCTTCCATCTTCTTACTTCCACTTCCTTTCTTCATTCTTCTCACCTTCT
TCATCTTTTTTTTACACATTCTTTCCCTCTTCCCTTTTCCACTCTTTTTT
TTTTTTATTCCTCCTTTCTCTCCCCTTGTTCTTCATTCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTAAAATACCAAATAAGAAGAGGCCAAGC
TCCCTGCTAGTAACATTAGAAAGCAGCTAATGATCACAAAGCTTGGAGCC
CAAATCCACCTTCTGTGACAGAGTTAGTTGATGACCCTTGGAGAACAAAT
GGATTTTTCATGAATAAGCACACACACAAAAATATATATGGCTTTCTATG
ACAACTTTTTTAAATCCCAAGGACATAAGAAGTTAAGAGTCTTAGAGTCT
ATTCAAAAGAAAACTTCTTAAAATCCTAACAAAGAGCTAGAGATTACAAT
AGTTTATAATCCTGACTACTGTTGAGGCTGAGACAGGAGGCTTGTGAGTT
GAAGTCCTGCCTGGACCATATACTGAGTTCAAAGCCAGCCTGGGCAATGT
AGTAAGACTATGTCTCAAAATAAAAAGGATGATGGAAATTTAACTTACCT
AACATGTGTGAGGAGCAGAATCCATCACCTGTACTTTAAAAACAAAAAGT
CTAAAAAAGGTTTTACTGTTTTAAAACATTGCTTGTTAACAGGAGGTACT
CTCCTGCTGACAGGATTGTTTGCACATAAGCTTTTCCTTTGACTGGCATT
GTGAACCCCCTGCGCGTTTATTACCCCCGGAATCAGGATAAATTGGCCCC
CGCCCTAGTTGTTTCTTATAACCTTTTTGTATTCTTTTATTAGTCCTCAA
TCCATTCTCCTCCCACATATTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_c18.b1 MSMg01no435_c18.b1 CHROMAT_FILE:
MSMg01no435_c18.b1 PHD_FILE: MSMg01no435_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:48 2005
         (424 letters)



>mm_chr7_125144331_125145154
          Length = 824

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 118 tctttttcctcttcccattctcctcccaaccttatccttttccttcctcctcttcatccc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tctttttcctcttcccattctcctcccaaccttatccttttccttcctcctcttcatccc 765

                                                                       
Query: 178 atctctcctcctcttcctctttttccttttcctccttttccttctctctcttaatctctt 237
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 acctctcctcctcttcctctttttccttttcctccttttccttctctctcttaatctctt 705

                                                                       
Query: 238 cctttttgtttgatgattgttaaatagggtcttgttgtgtagcccaggctggctttgaac 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cctttttgtttgatgattgttaaatagggtcttgttgtgtagcccaggctggctttgaac 645

                                                                       
Query: 298 acctcatgccacaggcaccctctccccacccttgacattcttttggtatctttttaacct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acctcatgccacaggcaccctctccccacccttgacattcttttggtatctttttaacct 585

                                                                       
Query: 358 ggaattcccttgcagatgtgtgaatgagttattctatttgggatccccatccgtatacac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattcccttgcagatgtgtgaatgagttattctatttgggatccccatccgtatacac 525

                  
Query: 418 ctcggct 424
           |||||||
Sbjct: 524 ctcggct 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_c18.g1 MSMg01no435_c18.g1 CHROMAT_FILE:
MSMg01no435_c18.g1 PHD_FILE: MSMg01no435_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:48 2005
         (462 letters)



>mm_chr7_125120973_125121834
          Length = 862

 Score =  855 bits (442), Expect = 0.0
 Identities = 457/462 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaataccaaataagaagaggccaagctccctgctagtaacattagaaagcagctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaataccaaataagaagaggccaagctccctgctagtaacattagaaagcagctaa 260

                                                                       
Query: 61  tgatcacaaagcttggagcccaaatccaccttctgtgacagagttagttgatgacccttg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgatcacaaagcttggagcccaaatccacctcctgtgacagagttagttgatgacccttg 320

                                                                       
Query: 121 gagaacaaatggatttttcatgaataagcacacacacaaaaatatatatggctttctatg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gagaacaaatggatttttcatgaataagcacacacaaaaaaatatatatggctttctatg 380

                                                                       
Query: 181 acaacttttttaaatcccaaggacataagaagttaagagtcttagagtctattcaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaacttttttaaatcccaaggacataagaagttaagagtcttagagtctattcaaaaga 440

                                                                       
Query: 241 aaacttcttaaaatcctaacaaagagctagagattacaatagtttataatcctgactact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttcttaaaatcctaacaaagagctagagattacaatagtttataatcctgactact 500

                                                                       
Query: 301 gttgaggctgagacaggaggcttgtgagttgaagtcctgcctggaccatatactgagttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gttgaggctgagacaggaggcttgtgagttgaagtcctgcctggaccatatagtgagttc 560

                                                                       
Query: 361 aaagccagcctgggcaatgtagtaagactatgtctcaaaataaaaaggatgatggaaatt 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagccagcctgagcaatgtagtaagactatgtctcaaaataaaaaggatgatggaaatt 620

                                                     
Query: 421 taacttacctaacatgtgtgaggagcagaatccatcacctgt 462
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 taacttacctagcatgtgtgaggagcagaatccatcacctgt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |