BAC Information

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BAC

Clone NameMSMg01-435G02
Chromosome7 (Build37)
Map Location 119,203,387 - 119,393,453
singlet/doubletdoublet
Overlap geneUsp47, Dkk3, Mical2
Upstream geneEif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678
Downstream geneMicalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G02.T7 (MSMg01no435_g02.b1)MSMg01-435G02.TJ (MSMg01no435_g02.g1)
ACCAG526698AG526699
length827748
length of high quality
(start - end)
274 (47 - 320)463 (80 - 542)
definitionCHROMAT_FILE: MSMg01no435_g02.b1 PHD_FILE: MSMg01no435_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:05 2005CHROMAT_FILE: MSMg01no435_g02.g1 PHD_FILE: MSMg01no435_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,203,387 - 119,203,656)(119,392,991 - 119,393,453)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTCTTTAAAGTTGTAGTGGCATTGGTTGTATTGCTTGTGTTCTCA
CCCATATATTCACTTGTAAGCTTGTTCTCTGGATTTGCTTGTAGAAACAG
ACACTTTTAATTCATTATCATTTGTTGCCTAGCAATAATTATATTCTAGG
TTCTTGGGAGGATAGAGATGTAGGAAAAGTAAGATCTTTGTTTTCAAGTA
ATTTATGATCTGTCTATAATAAATACCTGTGTGTTGTGAAATAATTTATT
TCACATTTAACATTTGGGGTCAGTTAAGTGCCACAAGGGCTGAAAGAGGA
TAGATATTCAGCGAAATGTGGATAAAATAGCGAAATCACATATATTTATC
TTTATTCATACACTTGTTCTGATTTCCCCTTTTTCCATCACGCCGTTGTT
CCTTTCTATTCTTTTCCTCCTTTAACATTTTTTTTTTTCTTTTTCCTTCC
CCTCTCCTCCTCTTCTTTATCTACTCCTTTTCTTCTGTTTCTTCCCACTT
TTCCCTTTCTTCGTCTTCTTCTCCTCCTTCTCTTCTATTTTCTCATTTTT
TTTCTTTTTCCTCCCCCTTCCCTTTCTTTCCCTCTCTCAAAATTCCCGTT
ACACAATTTTCGCCTCCTCCTCTCCTCTTCCCCCTCTTTCCTCCCAATCT
TCTTTTCTTTTTTCCTCCCCCTCTATCACTCGTTTCTTATTCCCCCATGC
TTATCTCTTTATCCCTCTACACACTTCTCTTTTTCTTCTACTTTTTCTCT
CTATCCTTCCTCTTTTCTTTTCTATTC
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCCTGATGGGGAAGATG
GCAGCATGGTCTTTGTAAATGGCAAAGTGCAATGTGAACTAGGAATTTAA
GCCATAATCATGTAACAGCACACACTTTCCCTGCCCTGAAGAAATGTGTA
ATCTGGGAAATGTTTTGGAAAACGTCTCAAGGTACCTATTTGGCCAACAT
CACATTCTATGTAATTTGGGCAAATTGTATGTTTCAACTTGGCACCGGAG
ACAGAGCTGGCGGGTGGAGTTCACATTAGAGCTTGCCTGGCCTTGTGTCA
AGCCAGGACTGAATGAATGAGCCAGGAGAGACCCACAATGCAATGTGGGA
GGAGAACACATGGTCACTCAGAAACAAAACAAGACAATTCATGGGCTCAC
GAGAGGAATGAGCTGGCCAGAAAGGCATACATGCCTCACCCCACACTTGC
TTCAGACAATGCTGGAATTCACTGCTTGCTGCCAACCTTCCTTCAGGGAC
ATAGTCTGGGTGCTATATGCCTTCAGGAAAAGTGTCCGTGTGTTGTGCCA
CGCATTTCTTGCTGCCACTCCTTGGTTTCTCCTTGCACCCTTTTCCCTCG
CCATCTAAAGCTACATAATTACGAACCCCGCAATTTTAAGTTTGTTCTCT
ACCAATCCCAACCTTATCTTACTATTACCCCCCCTGTCCCTCAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g02.b1 MSMg01no435_g02.b1 CHROMAT_FILE:
MSMg01no435_g02.b1 PHD_FILE: MSMg01no435_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:05 2005
         (274 letters)



>mm_chr7_119203183_119203856
          Length = 674

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctttaaagttgtagtggcattggttgtattgcttgtgttctcacccatatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttaaagttgtagtggcattggttgtattgcttgtgttctcacccatatatt 264

                                                                       
Query: 65  cacttgtaagcttgttctctggatttgcttgtagaaacagacacttttaattcattatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacttgtaagcttgttctctggatttgcttgtagaaacagacacttttaattcattatca 324

                                                                       
Query: 125 tttgttgcctagcaataattatattctaggttcttgggaggatagagatgtaggaaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgttgcctagcaataattatattctaggttcttgggaggatagagatgtaggaaaagt 384

                                                                       
Query: 185 aagatctttgttttcaagtaatttatgatctgtctataataaatacctgtgtgttgtgaa 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 aagatctttgttttcaagtaatttatgatctgtctataataagtacctgtgtgttgtgaa 444

                                         
Query: 245 ataatttatttcacatttaacatttggggt 274
           ||||||||||||||||||||||||||||||
Sbjct: 445 ataatttatttcacatttaacatttggggt 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no435_g02.g1 MSMg01no435_g02.g1 CHROMAT_FILE:
MSMg01no435_g02.g1 PHD_FILE: MSMg01no435_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:05 2005
         (463 letters)



>mm_chr7_119392791_119393653
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcctgatggggaagatggcagcatggtctttgtaaatggcaaagtgcaatgtgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acctgcctgatggggaagatggcagcatggtctttgtaaatggcaaagtgcaatgtgaac 604

                                                                       
Query: 61  taggaatttaagccataatcatgtaacagcacacactttccctgccctgaagaaatgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taggaatttaagccataatcatgtaacagcacacactttccctgccctgaagaaatgtgt 544

                                                                       
Query: 121 aatctgggaaatgttttggaaaacgtctcaaggtacctatttggccaacatcacattcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatctgggaaatgttttggaaaacgtctcaaggtacctatttggccaacatcacattcta 484

                                                                       
Query: 181 tgtaatttgggcaaattgtatgtttcaacttggcaccggagacagagctggcgggtggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtaatttgggcaaattgtatgtttcaacttggcaccggagacagagctggcgggtggag 424

                                                                       
Query: 241 ttcacattagagcttgcctggccttgtgtcaagccaggactgaatgaatgagccaggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttcacattagagcttgcctggccttgtgtcaagccaggactgaatgaatgagccaggaga 364

                                                                       
Query: 301 gacccacaatgcaatgtgggaggagaacacatggtcactcagaaacaaaacaagacaatt 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 363 gacccacaatgcaatgtgggaggagagcacatggtcactcagaaacaaaacaagacaatt 304

                                                                       
Query: 361 catgggctcacgagaggaatgagctggccagaaaggcatacatgcctcaccccacacttg 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 catgggctcacgagaggagtgagctggccagaaaggcatacatgcctcaccccacacttg 244

                                                      
Query: 421 cttcagacaatgctggaattcactgcttgctgccaaccttcct 463
           |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 243 cttcagacaatgctggaattcactgcttgctgccaaccatcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)