BAC Information

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BAC

Clone NameMSMg01-435P15
Chromosome7 (Build37)
Map Location 148,386,446 - 148,386,786
singlet/doubletsinglet
Overlap geneLrrc56
Upstream geneOlfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1
Downstream gene1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435P15.T7 (MSMg01no435_p15.b1)MSMg01-435P15.TJ (MSMg01no435_p15.g1)
ACCAG527154AG527155
length794787
length of high quality
(start - end)		373 (68 - 440)423 (73 - 495)
definitionCHROMAT_FILE: MSMg01no435_p15.b1 PHD_FILE: MSMg01no435_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:55 2005CHROMAT_FILE: MSMg01no435_p15.g1 PHD_FILE: MSMg01no435_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTTTTTGCTCTTAGTAGTTAAACAGCAATGCAAGACCAACTGGAAA
CAACTGGATGCTACACTTGGAGTCCAATTCAGATAGTTAAAAACTTGAGA
GAAAATGAGAGCAAGAGGAGAGAGCCAGTGTGTGTGTGTCTGTGTGTGTG
TCTGTGTGAGTCTCTGTGTGTGTCTACTGCTGTGGACTGAATCCAGGAGC
TCATGTACAAATGATAAACACTCTACCAACTGAGCTACATCCCCGCCTCT
TTCTAGAATTTTGACTGAAATTTCCCTCCTTACACTTCTAGGCTTGAGCC
AGCAGCATCTTCACAAACACATTTGTTCAAACTACTAGTCTGTTGGTACT
CTTGGCTTTGTTCTTTCTAGCCCAGAGTGACAGAACCACAAGGTGCTCTA
GCATTTTGAATGCAATGTTTTAAGCTAGTTCTTGAGAACTCTGAGAACAC
TAACCTTTCTTAATATTTCAGTCCCTGCTCCGTAGATACGTGTTCTGCCT
GGTCTTAACTTCAGCGGCAGGTCTTTCTTGACATCCGCCTTTACCTTTTT
TTTTTTCTTAGCATTTTCTTTTCCTTTTCTTTCTCCCCTGTTTTTTTTAT
CCCACTCTTTTATGATTCTTATTCCCTCTATTTTTTTTCCTCTTCCTCCT
TTTTCCTTTTCTATTTTCCCATTCTTTCCTTTCCCCCTCTTTTTTTCCCT
TCCTTATTTTCTCTCCCATTTTTCTTCTCGCCTTTTTTTATTTN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGTGTCTATTGCCACACCCTCTTTGT
GCTGTCATGACGATCATACCAAGGGCCTGGTGCATGGTAGGCAAGCCATT
GCGACAAAGAACCACAAGTCTGTGAAAGCAAAAGACATAGACTCTCGATT
GTGAATAGTGGTGGTAAGCTCTAAGGCTGGCACCAAGAGATAGGGGGTGA
CTTGTTAGTGGAAGATAAAGGCTGCTGCAAAGAGTGTGCTAACGCTAACT
AGCTTTAGTTAGTTTTGTGGCCACAACAGTTTTCTGCTTCAGTGTGCGAA
GGATATGGTTCCCAAGAGACACTGTGGTTTCCTGCCTGCAAGGAAAAAGG
CCAAAGAGTCTTTTCTGAAGTTACAGCCCTGGAGAGGCCTAAGTCTGAAA
CAACTCCCATCCCAGCCCCCCTGTGGGAGCCACCACATCTCCCACTGCAA
GGGCTTCCGGTCTGATATATGGACCCCACCCGACTCCAAGTTAACAGGGA
GTTTGCCAGGTCCTTGGATGGTGTCCCAACACAATTATCTTTGATTGAGA
TTTCCAAAAAGGGTCTCCTCCCCACCCCCTTTAGCATTGGAGCACCTAAT
TACCCGTGTTATTACTTTCACTAGGACATTCCTATTCTCTTTATCTCCCC
CCCCAAAACTTGGATTCTCCTATACCCAACAAAGCATTTTTTTACCTTTC
CCCTCCCTACTTTCTTTTTCTTCTCTCTCCTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_p15.b1 MSMg01no435_p15.b1 CHROMAT_FILE:
MSMg01no435_p15.b1 PHD_FILE: MSMg01no435_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:55 2005
         (373 letters)



>mm_chr7_148386014_148386786
          Length = 773

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  aacaactggatgctacacttggagtccaattcagatagttaaaaacttgagagaaaatga 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aacaactggatgctacacttggagtccaattcagatagttaaaaacttgagagaaaatga 714

                                                                       
Query: 92  gagcaagaggagagagccagtgtgtgtgtgtctgtgtgtgtgtctgtgtgagtctctgtg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gagcaagaggagagagccagtgtgtgtgtgtctgtgtgtgtgtctgtgtgagtctctgtg 654

                                                                       
Query: 152 tgtgtctactgctgtggactgaatccaggagctcatgtacaaatgataaacactctacca 211
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 653 tgtgtctactgctgtggactgaatccaggagctca-gtacaaatgataaacactctacca 595

                                                                       
Query: 212 actgagctacatccccgcctctttctagaattttgactgaaatttccctccttacacttc 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actgagctacatccccgcctctttctagaattttgactgaaatttccctccttacacttc 535

                                                                       
Query: 272 taggcttgagccagcagcatcttcacaaacacatttgttcaaactactagtctgttggta 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 taggcttgagccagcagcatcttcacaaacacatttgttcaaactactagtctgttggta 475

                                                     
Query: 332 ctcttggctttgttctttctagcccagagtgacagaaccaca 373
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 474 ctcttggctttgttctttctagtccagagtgacagaaccaca 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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