BAC Information

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BAC

Clone NameMSMg01-436A05
Chromosome7 (Build37)
Map Location 135,489,078 - 135,489,603
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781
Downstream geneRgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436A05.T7 (MSMg01no436_a05.b1)MSMg01-436A05.TJ (MSMg01no436_a05.g1)
ACCAG527181AG527182
length723842
length of high quality
(start - end)		568 (54 - 621)122 (86 - 207)
definitionCHROMAT_FILE: MSMg01no436_a05.b1 PHD_FILE: MSMg01no436_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:58 2005CHROMAT_FILE: MSMg01no436_a05.g1 PHD_FILE: MSMg01no436_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCCAGAATCTTTACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGGTCTTCACGCTTGGTGAAGACGTGTTTTACCAGCT
GAGCCATCTCTTCAGCTCTGAGCTAATATTTTCCAGATGTAAAGAACTGG
GCTATGTTGTCTCATCCCAAGAAACAAGAGATCCATGGCAGTGCAGTTGC
TAAGCTTACTACTACTGCAGCCCGGAGCCCGCAGTGCTGGAAGATGGGTA
GCATCGGTGAGGATGACACAGGTGAGAGGCAGGTTGAAGATGGGTTGGGC
TGCTTTCTCATCAGCCCTTGCCAGGTGGCAATGACAGCTCGTCAAGACTT
CCGCTTTCCACAAAAGCAGAAAACCAGGGTGTTAATGTGAAATTTCTTCA
TTTAAAAGTTTGACTATTAATTCAACATTTGTCTACTTCTTAGATACAGA
TGGAACAAAACACCCGCCTACAGTGTTACCAGTTTGCGAGCGTGCTACCA
GGTGCGCGTCAGCCCGATTGGAGGTGTGGGTGGGGTGGGAGAAGGCAGAG
TATGTTCCCTGGAGGTGAAGGACTACAGGTGAACTGGAGTGATGGTGGAG
ACTCGGGTGTCTGGAGGGCTTAATGGGAGGTGAGGGCTGTCCAGAGGTCA
GGCTTGGTGATGGGGGCGGGGCTAATGATGGTGCAGGTCTGGGCCTCATG
GATGGATCCAGGGCATCGGGTAT

GAAGGTGGTCGATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTCTTTTCCTTC
CTTCCTCCCCACCTTTTTTGGGGTGGTGATAATGGAGCTGGTAAGAGTTA
AGGGGATAGGTATTAGAGTCAGGGTATGTGAGTGAGAGAGAGAGAGAGAG
AGAGAGNGNGNNGGGGGGGGGTTGTGTGTTGGTGTGGGGGTGTTTTTTGG
TTTTGTTTTTTTTGTGATTGTGGGGGATGGTTGATTTCTTGTTGTTTTTA
GTTCTTGCGGTATAAGAAGGAATTTTTTTTTTTTTTGAGCAAAGGTGATG
AAGGACTCTAGTTCCCCTGTGGTGTTGTTTTTGCTATTTTTGCCTATGTT
TTTTTGTTTCTCTCCTGCTCGGTGTGCGCTGCCTTGATTCCCTCTTTATT
TATATTTTTTTTTTTTGTGTCTCCCTTTCAATCTTCTCTCTATTGTTTAT
TCCTTTACTTTTTATCTTTATTCTCCTTATTCTCTTTTTTTTTGTACTGA
GTTAACCTTCTCTTTTTTTCTTCCTCTCTTTATTTCTCCTCTATGACTCT
TCTTACATGGTTTCTCCCATTTCTGCGTTTCTTTCTGTTTTTTTTTTTTT
CTTTTGCCTTGCTTTTGCTTGTTGTTTTTGCTTTTTTTATTCTTCTTTCT
CTCCTTTATGTTATTATTTTATTCTCCTGCACCGTCTTGATTTTTTTTTT
ACTTCCTTGTTTTGATCTTCGGATTAGTTCTTGTTGTTGATTTTATTTAT
TACTTATCCTATGTTGTTAATTATTTATGCCGCGTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_a05.b1 MSMg01no436_a05.b1 CHROMAT_FILE:
MSMg01no436_a05.b1 PHD_FILE: MSMg01no436_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:58 2005
         (568 letters)



>mm_chr7_135489078_135490046
          Length = 969

 Score =  940 bits (486), Expect = 0.0
 Identities = 516/526 (98%), Gaps = 1/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtcttcacgcttggtgaagacgtgttttaccagctgagccatctcttcagct 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcaggtcaccaggcttggtgaagacgtgttttaccagctgagccatctcttcagct 467

                                                                       
Query: 65  ctgagctaatattttccagatgtaaagaactgggctatgttgtctcatcccaagaaacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctgagctaatattttccagatgtaaagaactgggctatgttgtctcatcccaagaaacaa 407

                                                                       
Query: 125 gagatccatggcagtgcagttgctaagcttactactactgcag-cccggagcccgcagtg 183
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 406 gagatccatggcagtgcagttgctaagcttactactactgcagccccggagctcgcagtg 347

                                                                       
Query: 184 ctggaagatgggtagcatcggtgaggatgacacaggtgagaggcaggttgaagatgggtt 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctggaagatgggtagcaccggtgaggatgacacaggtgagaggcaggttgaagatgggtt 287

                                                                       
Query: 244 gggctgctttctcatcagcccttgccaggtggcaatgacagctcgtcaagacttccgctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gggctgctttctcatcagcccttgccaggtggcaatgacagctcgtcaagacttccgctt 227

                                                                       
Query: 304 tccacaaaagcagaaaaccagggtgttaatgtgaaatttcttcatttaaaagtttgacta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tccacaaaagcagaaaaccagggtgttaatgtgaaatttcttcatttaaaagtttgacta 167

                                                                       
Query: 364 ttaattcaacatttgtctacttcttagatacagatggaacaaaacacccgcctacagtgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttaattcaacatttgtctacttcttagatacagatggaacaaaacacccgcctacagtgt 107

                                                                       
Query: 424 taccagtttgcgagcgtgctaccaggtgcgcgtcagcccgattggaggtgtgggtggggt 483
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 106 taccagtttgctagcgtgctaccaggtgcgtgtcagcccgattggaggtgtgggtggggt 47

                                                         
Query: 484 gggagaaggcagagtatgttccctggaggtgaaggactacaggtga 529
           ||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 46  gggagaagggagagtaggttccctggaggtgaaggactacaggtga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space:   535122
Effective search space used:   535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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