BAC Information

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BAC

Clone NameMSMg01-436I05
Chromosome7 (Build37)
Map Location 151,226,057 - 151,410,914
singlet/doubletdoublet
Overlap genenone
Upstream geneR74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I05.T7 (MSMg01no436_i05.b1)MSMg01-436I05.TJ (MSMg01no436_i05.g1)
ACCAG527561AG527562
length742732
length of high quality
(start - end)		271 (50 - 320)539 (77 - 615)
definitionCHROMAT_FILE: MSMg01no436_i05.b1 PHD_FILE: MSMg01no436_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:36 2005CHROMAT_FILE: MSMg01no436_i05.g1 PHD_FILE: MSMg01no436_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,410,648 - 151,410,914)(151,226,057 - 151,226,595)
sequence
NNAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAGTATTTCGCCATCGTAAGAGCCACTTGGTTGTCCTGAG
GAGACACACTGACAAAGATAGAACAAGGAGCAGAAAGCAAAGAGGCTCCA
TCTTGAGGATTCCTCCCTTGGCTTCAGGATGTGTGTGGACTTTGAGGGTA
GGTACCGCAAAAGTTCAGGAGGACTGTGCTAGTGCACATTGTCCTGGGTT
CCTCCTTGCCCTGCTGCACCTTGCCGAGTCTCTACTTCCTTGTCTGTAGT
GTGTGAGCATGGCAACTACCTTTTTTTGAAATTGTGCTAGCAGTGGCCAT
CTGTCCACCGGGCAGCTACAGGTTCTTACAGTCTTCCACTGGAGGCTGCT
GCCTGCCCCTGTACCACATCCTTTTGGTAGCCAGGAAACCAGATAGTCTG
CAGTACTCTGTGTAGCACAACTTGTTCCCTTCCCCTGGAGAGCTCCAATG
CACTCTTCAGAACTGAGGCAGTCAAACTCCATGTTCTGTCCTCCCCTCCC
TCTTCCCCTCTCTCCCTCCCTGTGCTTTCACCATCTAGTCTTAAAGTTCT
GATGATGAATAGCATATAGTACAAAACGCTGATCATTCTCCCCTCTGCTT
CCTGATCTGATAAGTGAAATCTGTACGTGTGAACAATCATTCCTTTGGCT
CCCTCTGTCTCGGAATTTCTGTTCGGTCCTCTTGTCTTCTTN

GGCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCTGGAATCTCAGCTCCCC
ACTGTGCATATCATTATCTTATCTTCCCTCTCCAGCTCAGGGACAGCTGG
CTCTTTATACTATCCATCCAGCAGGTATCCCAGCTCATTGTCTGCCTGTA
ACCCTGGGCCTACCATCACCACATCCCTAACATAACAACTTCTGTCAACT
GTGAGCTCGCTCCTCTTGGATCCTTTGTGGAAGCCCAGAGGCCTCTGACT
AAGTCTGGGTGCAGCCTGTAACATAGTTCTTCCCTTCCCCCACACCTGGC
CCAGCTCTGAGTATCTTCCTCAGCTAGGTTTACCTTTAAAAAGTAGTGTC
CTCTCTTCTAAACAGTCAAAAGAGCTTTATTGATTTGTAGGTTTTTATAG
ATTCCAGACTCTGTTTGTTTTAAGCATTCGGGTCAACAATTTCTAGTGAA
CTTAGCAAGCTGTTTGCCCATTGACTTCATCCAGGTTTGACACACTCCAA
CATCCCAGAAAGATCCCTCATGCCCACTGCCAGCCTGACAAATGTGCTTC
TACCCTCTGTCTCTGTTTTTCTTGGTCTGGACATTTCCAAGTAGACCAGG
CCACAAGTCAGTAGCTTCAGTGACTGGCATCTCACTCAGCATCATGGTGG
TCACTGCCTTATTTGGCTCTTAAAGGACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i05.b1 MSMg01no436_i05.b1 CHROMAT_FILE:
MSMg01no436_i05.b1 PHD_FILE: MSMg01no436_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:36 2005
         (271 letters)



>mm_chr7_151410444_151411114
          Length = 671

 Score =  462 bits (239), Expect = e-135
 Identities = 260/267 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagtatttcgccatcgtaagagccacttggttgtcctgaggagacacactgac 64
           ||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattctcagtaagtggccatcataagagccacttggttgtcctgaggagacacactgac 412

                                                                       
Query: 65  aaagatagaacaaggagcagaaagcaaagaggctccatcttgaggattcctcccttggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaagatagaacaaggagcagaaagcaaagaggctccatcttgaggattcctcccttggct 352

                                                                       
Query: 125 tcaggatgtgtgtggactttgagggtaggtaccgcaaaagttcaggaggactgtgctagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 351 tcaggatgtgtgtggactttgagggtaggtaccgcaaaagttcaggaggactgtgttagt 292

                                                                       
Query: 185 gcacattgtcctgggttcctccttgccctgctgcaccttgccgagtctctacttccttgt 244
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 291 gcacattgtcctgggttcctccttgccctgctgcaccttgctgagtctctactttcttgt 232

                                      
Query: 245 ctgtagtgtgtgagcatggcaactacc 271
           |||||||||||||||||||||||||||
Sbjct: 231 ctgtagtgtgtgagcatggcaactacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no436_i05.g1 MSMg01no436_i05.g1 CHROMAT_FILE:
MSMg01no436_i05.g1 PHD_FILE: MSMg01no436_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:36 2005
         (539 letters)



>mm_chr7_151225857_151226795
          Length = 939

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttccctggaatctcagctccccactgtgcatatcattatcttatcttccctctccagc 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 201 ttttccctggaatctcagctccccactgtgcatgtcattatcttatcttccctccccagc 260

                                                                       
Query: 61  tcagggacagctggctctttatactatccatccagcaggtatcccagctcattgtctgcc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagggacagctggctccttatactatccatccagcaggtatcccagctcattgtctgcc 320

                                                                       
Query: 121 tgtaaccctgggcctaccatcaccacatccctaacataacaacttctgtcaactgtgagc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaccctgggcccaccatcaccacatccctaacataacaacttctgtcaactgtgagc 380

                                                                       
Query: 181 tcgctcctcttggatcctttgtggaagcccagaggcctctgactaagtctgggtgcagcc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tcgctcctcttggatcctttgtggaagcccagaggcctctgactgagtctgggtgcagcc 440

                                                                       
Query: 241 tgtaacatagttcttcccttcccccacacctggcccagctctgagtatcttcctcagcta 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaacatagttcttcccttcccccacacctggcccagctctgagtatcttcctcagcta 500

                                                                       
Query: 301 ggtttacctttaaaaagtagtgtcctctcttctaaacagtcaaaagagctttattgattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttacctttaaaaagtagtgtcctctcttctaaacagtcaaaagagctttattgattt 560

                                                                       
Query: 361 gtaggtttttatagattccagactctgtttgttttaagcattcgggtcaacaatttctag 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaggtttttatagatcccagactctgtttgttttaagcattcgggtcaacaatttctag 620

                                                                       
Query: 421 tgaacttagcaagctgtttgcccattgacttcatccaggtttgacacactccaacatccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaacttagcaagctgtttgcccattgacttcatccaggtttgacacactccaacatccc 680

                                                                      
Query: 481 agaaagatccctcatgcccactgccagcctgacaaatgtgcttctaccctctgtctctg 539
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaagatccctcacgcccactgccagcctgacaaatgtgcttctaccctctgtctctg 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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