BAC Information

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BAC

Clone NameMSMg01-436O14
Chromosome7 (Build37)
Map Location 117,694,635 - 117,695,140
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneSt5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, LOC668246
Downstream geneAdm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436O14.T7 (MSMg01no436_o14.b1)MSMg01-436O14.TJ (MSMg01no436_o14.g1)
ACCAG527867AG527868
length724711
length of high quality
(start - end)
506 (91 - 596)438 (162 - 599)
definitionCHROMAT_FILE: MSMg01no436_o14.b1 PHD_FILE: MSMg01no436_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:06 2005CHROMAT_FILE: MSMg01no436_o14.g1 PHD_FILE: MSMg01no436_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCCCATTTCCACTTACTCTNCAGAAACATTCCAGTT
TAATTAAATAATTACTCTAATTTTAGTTTTAACATTAGGGAAAGGTGCTT
TAAGTAAAATTAGGCAGGAGTTACCTTTGATTCAAGTTTTCAGACTATTA
TCAGAACTCACCTGCACTGGAAACCTACTACTAGCTAGACTAAAATATGA
ATGAACTCTCACTGAGACATGTAACCAATATGATTGGATTATGGGTATGG
TGACATGCAGAAAGGAGAAAAGCACTTCTAGGAATCAAGCATACAACACT
CTCAGAGCGAAGATGACACGTCAATGGAGCTAAGAGTAAGAAAGCACACA
GCCGCGCAGAGTGGATATATCTAGAATCCCAACACTTGGGATAGTGCCAA
GAGGATCAGGAGTGTAAAGTTATCCTTAGCTATGGGGCAATTTTGAGGCC
AATTTGTGTTACATGAGCCTCTTTCAAAACACATAGAAAAAGAAAACTCA
AACAGACTAAATGTAATAGGACAAAGACTGTATTATGCTTTCTCTGATGT
CCAACGTGTGTTTACCCATACCTATCCTGACACCAATGATGCACCCAATC
ATTTAACTCCATACTTTATTACCCAGAGTTAGCACAGACTCTTAAGTCCA
GGGTTCGGGCCCCCAAGACTCATT
TCAATTGTTCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTAACAGGAGTCTGT
GATCAGGGTTACACTGTTCCCCAGTCATGTGCATTTCCTAGCTCCTGTGA
CTAAAGGATGACTTACCCATCAGAAGATTTCTAAGAACGGGCGATAATGG
ATTATTTAAATACATACTTGGAAAATAAACCCTGCTACAAAAAGGAACCT
GTCCTGTGTTAACCTGACACAGCCCTGAGTCTCCTGGGAAGAGGGAACCT
CAGTTGTAAAATTACCAATTATGTTATTGACCCATGACCAAGTGTACAAG
GAGTGTGTCTTGACTGATGATTGATATGGGAGAGCCCAGTCCACTGTGGG
TGGCACCATCCCTACGAGGTAGACCTGAGATGGTAAAGGAAGCTAGACAA
GCTAGTAATAGCATTCCTCCATGGTTTCTGCTCCAGGTTCCTGTCTTGAG
TTCCTGCCTCAATAACAGATTATGATCTGGAAGTGCAAGCTGAAATAAAC
CTGTCTCTTCCCTATGATGCTTTTTGTCAGAGTGTTTTATTACCGTAACA
AAAGAAAACTAGGCCAGGGCCATTTGAAAAAGTCAGCTCTATAATTCATG
TCCACAACTACCCTAATTTTGCAAAGTAAAAAGTTCAGGTTCTTAGAATT
CAGTTGTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_o14.b1 MSMg01no436_o14.b1 CHROMAT_FILE:
MSMg01no436_o14.b1 PHD_FILE: MSMg01no436_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:06 2005
         (506 letters)



>mm_chr7_117694435_117695340
          Length = 906

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattccagtttaattaaataattactctaattttagttttaacattagggaaaggtgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattccagtttaattaaataattactctaattttagttttaacattagggaaaggtgctt 260

                                                                       
Query: 61  taagtaaaattaggcaggagttacctttgattcaagttttcagactattatcagaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtaaaattaggcaggagttacctttgattcaagttttcagactattatcagaactca 320

                                                                       
Query: 121 cctgcactggaaacctactactagctagactaaaatatgaatgaactctcactgagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcactggaaacctactactagctagactaaaatatgaatgaactctcactgagacat 380

                                                                       
Query: 181 gtaaccaatatgattggattatgggtatggtgacatgcagaaaggagaaaagcacttcta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 381 gtaaccaatatgattggattatgggtatggtgacatgcagaaaggagaaaagcacaacta 440

                                                                       
Query: 241 ggaatcaagcatacaacactctcagagcgaagatgacacgtcaatggagctaagagtaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatcaagcatacaacactctcagagcgaagatgacacgtcaatggagctaagagtaag 500

                                                                       
Query: 301 aaagcacacagccgcgcagagtggatatatctagaatcccaacacttgggatagtgccaa 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacacacagccgcgcagagtggatatatctagaatcccaacacttgggatagtgccaa 560

                                                                       
Query: 361 gaggatcaggagtgtaaagttatccttagctatggggcaattttgaggccaatttgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggatcaggagtgtaaagttatccttagctatggggcaattttgaggccaatttgtgtt 620

                                                                       
Query: 421 acatgagcctctttcaaaacacatagaaaaagaaaactcaaacagactaaatgtaatagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgagcctctttcaaaacacatagaaaaagaaaactcaaacagactaaatgtaatagg 680

                                     
Query: 481 acaaagactgtattatgctttctctg 506
           ||||||||||||||||||||||||||
Sbjct: 681 acaaagactgtattatgctttctctg 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)