BAC Information

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BAC

Clone NameMSMg01-437K08
Chromosome7 (Build37)
Map Location 12,835,482 - 12,835,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092
Downstream geneV1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437K08.T7 (MSMg01no437_k08.b1)MSMg01-437K08.TJ (MSMg01no437_k08.g1)
ACCAG528429AG528430
length753765
length of high quality
(start - end)
345 (73 - 417)455 (80 - 534)
definitionCHROMAT_FILE: MSMg01no437_k08.b1 PHD_FILE: MSMg01no437_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:06 2005CHROMAT_FILE: MSMg01no437_k08.g1 PHD_FILE: MSMg01no437_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAACATTATTCCATGGCAAAAGCTGCTGGCAAAAGCACACT
CCTTCCTAGCTCATACAATGAATCATAATCAGCTGCTGTGGACAATCAGA
AGCAGCCCAATATCCCACACCTGGGATGAAAATGAAAACATTCTTATAAC
ATTTCTGTGTTTTTTAAAGAAACCAAATTTCTCACTACAAATGCTACTAA
AGTCAGATTTTGAAACTCTCTTCACCAAGTTCCATGTATTATATGTTACA
ATCCCCATGGAGGTAATAGAGCTTTTATATTTCAATGATAAGTACTTGGG
TTATTGAGATGTACATACTCTAGAAGACTAAAGGACTGTATTTGACATAT
TTCTTCTTTGCAGAAAAAAGCCCTTCTTTTAGTAAAAATTATTATAAATG
AAGTACATTAGTAATGAAATTCCTCAGAAGAAAGGAAGAATTCAGAGGCA
TATATCTCTGAAGATAAAAATATACTCCAAGAACAGAATTTACACACCAT
TGAAATATTTTGATCAACATTTTACAAAGTAGATGTTATAGTACATGGCA
TGTAGGACACACTGGCAATGGAGATACTCATGCTAGTAATATAATCCCCA
TATGTTTCAGAGGATGGCGACAATTCTTAATTATTTTATATTTTACAGCA
TTTACAACTTGAATATTATGATGTCTTATCTTATGTCAATTATGTCCCTT
TTN
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTA
ACATCAAAAACTCAGGTGACAGAAGATGCTGGCGAGGATGTGGAGAAAGG
GGAACACCTCCCTTGTTGGTGGGATTTCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGAACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCATCCGGTAA
GAAGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAATCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAGTGGAATACTACTCAGCTATTAAAAAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGTACTGGAGGGCATCATCCTGAGT
GAGGCAACCCACATTCCCAAGGAACTCGCACCATAAGTACTTCCCTGATA
AGCCCTGATATTATCCCATAACTTTACGGAATTTTCGGATATTAAAAATC
TCTCTGCTAAAAGCTCTTGAATTTTCTAACATGAATACTTCTTTCGTTGC
ACACTCTTACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_k08.b1 MSMg01no437_k08.b1 CHROMAT_FILE:
MSMg01no437_k08.b1 PHD_FILE: MSMg01no437_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:06 2005
         (345 letters)



>mm_chr7_12835281_12836026
          Length = 746

 Score =  592 bits (306), Expect = e-173
 Identities = 336/348 (96%), Gaps = 6/348 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaaaagctgctggcaaaagcacactccttcctagctcatacaatgaatcataatcag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 202 tggcaaaagctgctggcaaaagcgcactccttcctagctcatacaatgaatcatagtcag 261

                                                                       
Query: 61  ctgctgtggacaatcagaagcagcccaatatcccacacctgggatgaaaatgaaaacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgctgtggacaatcagaagcagcccaatatcccacacctgggatgaaaatgaaaacatt 321

                                                                       
Query: 121 cttataacatttctgtgttttttaaagaaaccaaatttctcactacaaatgctactaaag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttataacatttctgtgttttt-aaagaaaccaaatttctcactacaaatgctactaaag 380

                                                                       
Query: 181 tcagattttgaaactctcttcaccaagttccatgtattatatgttacaatccccatggag 240
           ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tcagattctgaaagtctcttcaccaagttccatgtattacatgttacaatccccatggag 440

                                                                       
Query: 241 gtaatagagcttttata---tttcaatgataagtacttgggttattgagatgtacatact 297
           ||||||||||||||| |   |  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaatagagcttttagaacat--caatgataagtacttgggttattgagatgtacatact 498

                                                           
Query: 298 ctagaagactaaaggactgtatttgacatatttcttctttgcagaaaa 345
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctagaagactaaaggactgtatttgacatatttcttctttgcagaaaa 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space:   247632
Effective search space used:   247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)