BAC Information

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BAC

Clone NameMSMg01-437M10
Chromosome7 (Build37)
Map Location 71,989,493 - 71,989,899
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik
Downstream geneNdnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M10.T7 (MSMg01no437_m10.b1)MSMg01-437M10.TJ (MSMg01no437_m10.g1)
ACCAG528528AG528529
length790837
length of high quality
(start - end)
392 (76 - 467)127 (79 - 205)
definitionCHROMAT_FILE: MSMg01no437_m10.b1 PHD_FILE: MSMg01no437_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:17 2005CHROMAT_FILE: MSMg01no437_m10.g1 PHD_FILE: MSMg01no437_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNAAAATCCGC
GGAATTCTTCTTTTATCCTCATAATGGTATATTTTGCACTTTTATGGTGT
CCCTAGAGCTTGCATGCTATGCTCATAGATTTAAAACAAACAAACAAACA
CCATTATCAATGACCTTGACTGACTAATCAGAATGCCTTGTCTTCAATCC
TGGCATTCGCTCCTGCACAGCAGCCAGGTTTTCTGCTGAGCTTTTGATTT
ACCGGTTTTCCTTCACATTATTTTGGCTTCATCTTTCTTCAGTATTTGTC
TTTTTTGAATTCTATTTTTATAGCTCCTTATGGATGTTCTTATTTTACTC
ATTTGTGTGTATTCTCCTGGAATTCAGGAGGTTATTGCATTTTCTTTGAG
TTCTTTGTTCAGAGTTTAGCCTAAATCACTCTTATTGTGGGTTGCAATTT
GTTTTTGTAATTTTCGGAGGAGACTGTTGTCTTGATTTTTTCCTGTTGCT
TATGCTCTTGTGTGTGGACTTTACCATCTGTGGTTATATTGTCGACTCCC
CCTGTGTACGCCCTCCTTCATCATACTTGCTTTTCCTTTTTTTGCTCCAA
CTTGCTTATATCTTCTTCAAACCCTTATCCCTCCTATTTTCTTATCCTTT
CCTTCCTCCCTCCCACTTTTTCCCTCTCCCTTTTCCATCTTCCTTTTCTC
AACTACTTTCATATCAAACCTTCTTCCCCCACCCCCCCCTTTTTCCTTTT
CTTCTTATCCTCCACTTCCCAATTCCCTTACCCTTTCTTG
NCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGAGGAGCTTCACAGATCTA
GAGGAACAGAGGCAGCTACACTATGAGCTACACTATGGGCCAACTTGTCA
GAAAGATACCAAGAAAGGAGGTAAAGAAGTGTAGGGAGGGTAGGGTTTTG
TCTGTCCCATCTCCTTTCCTGTTTCCCCTCTCTTTTTGTTTTTTCCCTCC
CTTCTTTTTTTCCTTTTTTTCTCTTCTCCTCTCTTTTTTCTTTCCCCTTT
CCCTCCCCTCCCTTCCCTCTTTTTTTTTTTTTTTCCCGCCCTTTTTTCCT
TTTCTTTTTTCCCTTTTTTTTTCCTTCTTTTTCTTTTCCCTTTCTCCCCC
TCCCTTTTTCCTTTTTCTTCTTTCCTCCCCCCCCCCTCTTTCTTCTTTCC
CTTTCCTTTTTCTTTTCTCTCTCCCCCCCTCTTCTTTTTCTTCCTCCCCC
CTCTCTTTCTTTCCTTTTTTCTCCCTTACCCTCCCCTTTTTCTCTCTCCT
CTCCTTTTCCTCTTTCCCTTTCTTCCTTTCCCCCCCCCCTTCTTTTCCCC
TCTCCCCTTCCTCCTTCTTTCTTTTTCCCCCTTTCTCTCCTCTCCTTTTC
CCCGTCTGCCTCTTTCCCTCTCTCCTTTCTTTTCCATTTATCCCTTCCTT
CCTTTCACTTTCTTTCTTTTCCCCTTTCTTCCCTTCCTTCCTCTCTTTTC
CCTCTTTTTCTCTTTCTCCCGTCTCTTTCTTTCTCTTTATCTTTTCCCTC
TCCCCTTCTTTTTTTCTTCTTTCCTTCTCCCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m10.b1 MSMg01no437_m10.b1 CHROMAT_FILE:
MSMg01no437_m10.b1 PHD_FILE: MSMg01no437_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:17 2005
         (392 letters)



>mm_chr7_71989235_71990025
          Length = 791

 Score =  646 bits (334), Expect = 0.0
 Identities = 382/408 (93%), Gaps = 17/408 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtatattttgcacttttatggtgtccctagagcttgcatgctatgctcatagattta-- 58
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  
Sbjct: 665 ggtatattttgcacttttatggtgtccctagagcttgcatgctatgttcatagatttaaa 606

                                                                       
Query: 59  --------------aaacaaacaaacaaacaccattatcaatgaccttgactgactaatc 104
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acaaacaaacaaacaaacaaacaaacaaacaccattatcaatgaccttgactgactaatc 546

                                                                       
Query: 105 agaatgccttgtcttcaatcctggcattcgctcctgcacagcagccaggttttctgctga 164
           |||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 agaacgtcttgtcttcaatcctggcattcgctcctgcacagcagccaggctttctgctga 486

                                                                       
Query: 165 gcttttgatttaccggttttccttcacattattttggcttcatctttcttcagtatttgt 224
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gcttttgatttaccggtttttcttcacattattttggcttcatctttcttcagtatttgt 426

                                                                       
Query: 225 cttttttgaattctatttttatagctccttatggatgttcttattttactcatttgtgtg 284
           |||| |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||
Sbjct: 425 ctttattgaattctatttttatagc-ccaaatggatgttcttattttactcatttgtgtg 367

                                                                       
Query: 285 tattctcctggaattcaggaggttattgcattttctttgagttctttgttcagagtttag 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tattctcctggaattcaggaggttattgcattttctttgagttctttgttcagagtttag 307

                                                           
Query: 345 cctaaatcactcttattgtgggttgcaatttgtttttgtaattttcgg 392
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctaaatcactcttattgtgggttgcaatttgtttttgtaattttcgg 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space:   299506
Effective search space used:   299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)