BAC Information

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BAC

Clone NameMSMg01-437M24
Chromosome7 (Build37)
Map Location 105,379,484 - 105,379,894
singlet/doubletsinglet
Overlap genePhca
Upstream geneGab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6
Downstream geneTsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M24.T7 (MSMg01no437_m24.b1)MSMg01-437M24.TJ (MSMg01no437_m24.g1)
ACCAG528556AG528557
length778800
length of high quality
(start - end)		439 (71 - 509)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no437_m24.b1 PHD_FILE: MSMg01no437_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:20 2005CHROMAT_FILE: MSMg01no437_m24.g1 PHD_FILE: MSMg01no437_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCAGAGCTTACCGAGAAAGAAGTAAGAAAGTCAGATATAATA
GAATAATTAGGCACACCAAGGCCAACTGAAAAGCAGTCATGCACAAATGA
AATCTATACAGCCATTGTCCAGGGCTAAGGTTAGGAGAAGTGGAAACAAC
TGTTGTTACAAAGAGTTGCTGTGGGCTACTGAGATGTCTCCATCCCAGCC
TACCTCAGGCAGTCCCTATTTCATATGGCAGGTCCCCTGGAGGGATGTGT
CTCCTACTTCTCAGGGTCCCAGACGCCATCCTTTTCTACAAGGAGCTGCC
GCAGGCTTCTGAGATGTCTCCATCCTGGCCTACTGCAGGCAGTCCCTGTC
ATTGTATGCTGTCCCCAGCAGCTCACAAATGCCTGTAACACCAAACTCAG
GGTAGCCCGCACCCTGTTCTGGCTTCCGTGGGCAGCTGCATACATGTGAC
ATATATTTATACAAGTGCACCCCAATACATGAATAAATATTAAAATTTTA
ACTTGCTCACCGAAATTGGTCCGGGGGAAAATATTGCTTACCGCTAGAAT
AAAGGCCTAGTTTCAACCCCGGAATTCCTGGGAGGAAAAAAAAAACCCTC
CTCCAATTTTGGTTCGGGCCCAATTTTTCCTTGGAAGAAAAAAAAATTTC
CCCCCCAAAATTTTTCTTCTTTCTTTCCTCCCCCCCTTCTTCATTTCTTT
ATTTCTAAATTCTCTTCCATTACCATTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTTGGAAATCTTTCTTTAGA
AATTCAATGGCACTGGTCTACTGTCTTCAAGCTTCTCATGGGGCTTTTGG
AAATTTAAAAACTTTCTGATTTCTAGTCATGTCTTCCAATTATTTCCCAG
ACTCCTTGTTCCTGCTATTGCCTGATACTTAAAAACATTCTGTCATGCAA
GGCGAGGTTCTTGGCTTAGGATGTGGCTTTCTAGGTCAATCTAATAAATT
TATAGAAATCTATTTACTTTTCTGTTTTGAAGATTTTACTGAATCTTTTC
CTTGTGACTTTGTGCATTTAAAATAAAGTTTTTGTTGTAGTCTTAAAGCT
AGATGGAAGCAAAACAGATGGCTGATACTTTGAAATACTATGCTCTTTGG
TATTTCTATCATTCATTTCTCTTCAGGTTTACTCTATCTGATTTAGAATT
TGTTGTTTTGAGACACAGTTTCATGCAGCCCANGCTTGGGCCTTGACTTG
TTATAATAGCCAAGAATGAACTTTGACTCTTCCCCAGTACAGGGGTTATT
AGGCAAGGGTTAAACATCCTGGGCCTTTGTTTTTTAATTCTTAAAGTTGG
AAAGTTCGGTTCATTATTTAATTGGTCCTCCCCCCCCTTTGGGCGGGAAA
TTTTAATAAGGAACCTGGAGGAGACTTGTGACCTAAAATACCCCTGGGTT
TGGCCCCCCNAAAAAGGGGTTTAGAAGGTATTGCCCCCTCCCCCGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m24.g1 MSMg01no437_m24.g1 CHROMAT_FILE:
MSMg01no437_m24.g1 PHD_FILE: MSMg01no437_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:20 2005
         (415 letters)



>mm_chr7_105379280_105380094
          Length = 815

 Score =  795 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttggaaatctttctttagaaattcaatggcactggtctactgtcttcaagcttctcatgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttggaaatctttctttagaaattcaatggcactggtctactgtcttcaagcttctcatgg 264

                                                                       
Query: 65  ggcttttggaaatttaaaaactttctgatttctagtcatgtcttccaattatttcccaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcttttggaaatttaaaaactttctgatttctagtcatgtcttccaattatttcccaga 324

                                                                       
Query: 125 ctccttgttcctgctattgcctgatacttaaaaacattctgtcatgcaaggcgaggttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccttgttcctgctattgcctgatacttaaaaacattctgtcatgcaaggcgaggttct 384

                                                                       
Query: 185 tggcttaggatgtggctttctaggtcaatctaataaatttatagaaatctatttactttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcttaggatgtggctttctaggtcaatctaataaatttatagaaatctatttactttt 444

                                                                       
Query: 245 ctgttttgaagattttactgaatcttttccttgtgactttgtgcatttaaaataaagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgttttgaagattttactgaatcttttccttgtgactttgtgcatttaaaataaagttt 504

                                                                       
Query: 305 ttgttgtagtcttaaagctagatggaagcaaaacagatggctgatactttgaaatactat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgttgtagtcttaaagctagatggaagcaaaacagatggctgatactttgaaatactat 564

                                                              
Query: 365 gctctttggtatttctatcattcatttctcttcaggtttactctatctgat 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctctttggtatttctatcattcatttctcttcaggtttactctatctgat 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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