BAC Information

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BAC

Clone NameMSMg01-438D13
Chromosome7 (Build37)
Map Location 113,899,230 - 113,899,868
singlet/doubletsinglet
Overlap genenone
Upstream geneTpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698
Downstream geneOlfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438D13.T7 (MSMg01no438_d13.b1)MSMg01-438D13.TJ (MSMg01no438_d13.g1)
ACCAG528867AG528868
length7631,618
length of high quality
(start - end)		652 (31 - 682)---
definitionCHROMAT_FILE: MSMg01no438_d13.b1 PHD_FILE: MSMg01no438_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:55 2005CHROMAT_FILE: MSMg01no438_d13.g1 PHD_FILE: MSMg01no438_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTC
TCCAGCTGATTACAAAGGCTACTTTCTCAGGTTCTTTAGGACTCTACTTA
TATTATTATGGTCCTTTATGGATGATTTCCAACTTCCTATGGTTGTTCCA
TGTAGAGTCTGTAGATATGAGAGTCTCTCTCCATTGACATCTGGAGGCTT
ACGACAGCTTCTATGTCTGTTTATGTCTTGTTAAGGTTGGTAGTGGTTAA
AAAAATGAGAGTTCCATTTTCCAAGTATCAGGTGGAAAATTAAAAACAAA
TCCACATAATACTAGAGTTGTAAAGGATCAATATTAATTAACATCTTTTA
AATATTCCCATAAATTAAAGATAGGCTGATGATTACATAAACATACTTGG
TTGACAATTGTCTATCAATGGCAGAAATAGATGAGAAAGAGATGGGTCTT
AAAAGGAAATAAAACTGCTCACATAGACTCTCAGGGCACATCTGAAATGT
TATCAGTGAATGAAATTGAATAAAAAGAAAAGAGAACTCTCTCCAAGGAC
TCCCAGTAAAATAACTTTAGTAAGAAGAAAAGTGATGTCTGTTGGATAAA
TGATGTATAAGGAACCTTGCTGAGCTAAAAACATATTTAATAATTGTATT
TAACTCCTGAAATCTAAAAATATTTATATTTCTAATCTTANNAGATTATT
ATTTTTTATTATGTGAATGAGCTTGTGTCTGTTTGGGCCTGTGTTCTTGT
GAATGCAACTTCT

TCATCAGCAGAATCATAGTCAGGCAGGAGTGCTGTATGNGATACGCGCGC
CTCTCCTCCCCGCTGGCTCCACAAGGCGTGCTNGCTGGGTNGGNCTGTTG
CGGCGCCGCTCTCTACTGATGACACAGACACATTATCTAGTGACATGGGT
GTGTGACAAGCATGTCTAGCACAGCGACCCGGTTTGGTACGCTCATCAGG
CGGTCTACGCGGACCGCGCTGAGGCCGTTGAGATGCACGAATCGTCGACG
AAGAATGGAGACCAACGAGTCGAGCGCGGTGCAGAGNACGCGCACGACAT
AGCCTGCGCTGCAGAACGAGAGTGCCACGCATGACTCGCGCACTGTCCTC
CAGACGTGTCCCTCACAGCGTCGTTATGCTCTGTGCGTAGCTGTAACTGT
GTCCGTTATATCGGTTGTGTTCCCCACGATCGTGCCGTGCCTCTGGCGTC
TGCGATTATTTAGATATGTAGTTGCCTGACACCCCGAACGTAGCGGATCG
ACAAGAGAGCATCGGGACGAACGCGCGACGACTGCTCGTATAACTCCGCC
CACATCGTTATGAATGTACTACCTATATGACGATATCTGATTCCATATTC
GATATCACTCTCGTCATTGTGTATATATGCCGCAAATAGGTCATGTATTA
ACAGATGTTACTAGATCGCGCATATTGTGCGTAGAGAACTAGATGTTACT
ATATCTGATACGTGGCATACTCACTTACTTATAGCGCACGTGTACTCGTA
CTTNCGTCAGCATCGCGTGCTATGCCACTCTCTTGTAATGGTAAGTCGGG
ACACGTCCGGATTCTATGCTCGCCCGTAGGCAGTACACCGCTACGTAGTG
AATAGCACGCTACTATACATGTCGCTATATACTATACAGCGCGCGAATCT
ATCTGCTTCAGTATATATGCTAACAGTATACGACCGCCATAATCCGAACG
TATAATGATCTGCCGCTCGAGCTGCGTTCCTCATCCAATGATACAGCGTC
GCGCTGTCTGAGCCACACGCTACGCAACACTCACTCATACTATCGCATCG
CCTACTATATCACTAACTCTACTATTATCATANATCGCGCTTAACTCACG
TATACGTGTATCACGCTATGCTCGCCTGCATCGTACACTAGCGGTATTCA
TCGCCACACTCTATGCTCGATGCTATCTAGTGATATGTCGTCCAAGATCG
ATCCGCCGCATCTACCATTAGATAGGANTCACACGCTCACATTAGCCATC
ATGTGTTTAGACATCAGTGATTATGTATCTCACGANGATACACAACCACA
TACGTAGTGCGCCTCTACGACAGTCACACATGTGTAGAGTACTCGCCGGC
CAACCACTATCTGCGCACCCTCTCACTCTGCTTTTTCACCACTACTCNGT
CTCACGTCATAGTACGTGTCTAATAATCACCAACTCTGGTGCACATCACT
CTCACTGATACCACTCGTCTCTCTATAATGAAGTTCGTTCGCTATTGATG
TACTACGTGTCTCACGTGCGCGGTGTGATTAGCAGCGCGCTNTCAGACTC
GTGNATACGGCGCCACGACGTCGGATATAGACTATCTTCGTTGGCAGCGC
GACATATGAGATCTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_d13.b1 MSMg01no438_d13.b1 CHROMAT_FILE:
MSMg01no438_d13.b1 PHD_FILE: MSMg01no438_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:55 2005
         (652 letters)



>mm_chr7_113899016_113900068
          Length = 1053

 Score = 1151 bits (595), Expect = 0.0
 Identities = 628/641 (97%), Gaps = 5/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattctccagctg---attacaaaggctactttctcaggttctttaggactctacttat 71
           ||||||||||||||   |  | |||||||| |||||||||||||||||||||||||||||
Sbjct: 215 gaattctccagctgagaa--aaaaaggctagtttctcaggttctttaggactctacttat 272

                                                                       
Query: 72  attattatggtcctttatggatgatttccaacttcctatggttgttccatgtagagtctg 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 attattatggtcctttatggatgatttccaacttcctatggttgttccatgtagagtctg 332

                                                                       
Query: 132 tagatatgagagtctctctccattgacatctggaggcttacgacagcttctatgtctgtt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tagatatgagagtctctctccattgacatctggaggcttacgacagcttctatgtctgtt 392

                                                                       
Query: 192 tatgtcttgttaaggttggtagtggttaaaaaaatgagagttccattttccaagtatcag 251
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 393 tatgtcttgttaaggttggtagtggttaaaaaaatgagagctccattttccaagtatcag 452

                                                                       
Query: 252 gtggaaaattaaaaacaaatccacataatactagagttgtaaaggatcaatattaattaa 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtggaaaattaaaaacaaatccacataatactagagttgtaaaggatcaatattaattaa 512

                                                                       
Query: 312 catcttttaaatattcccataaattaaagataggctgatgattacataaacatacttggt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 catcttttaaatattcccataaattaaagataggctgatgattacataaacatacttggt 572

                                                                       
Query: 372 tgacaattgtctatcaatggcagaaatagatgagaaagagatgggtcttaaaaggaaata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgacaattgtctatcaatggcagaaatagatgagaaagagatgggtcttaaaaggaaata 632

                                                                       
Query: 432 aaactgctcacatagactctcagggcacatctgaaatgttatcagtgaatgaaattgaat 491
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 633 aaactgctcacatagactctcaggacacatctgaaatgttatcagggaatgaaattgaat 692

                                                                       
Query: 492 aaaaagaaaagagaactctctccaaggactcccagtaaaataactttagtaagaagaaaa 551
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaaaagaaaagagaactctctccaaggactcccagtaaaataactttagtaagaagaaaa 752

                                                                       
Query: 552 gtgatgtctgttggataaatgatgtataaggaaccttgctgagctaaaaacatatttaat 611
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 753 gtgatgtctgttggataaatgatatataaggaaccttgctgagctaaaaacatatttaat 812

                                                    
Query: 612 aattgtatttaactcctgaaatctaaaaatatttatatttc 652
           ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 813 aattgtatttaactcctgaaatctaaaaatatttagatttc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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