BAC Information

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BAC

Clone NameMSMg01-438F12
Chromosome7 (Build37)
Map Location 30,565,352 - 30,565,608
singlet/doubletsinglet
Overlap geneZfp84
Upstream geneSirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik
Downstream geneLOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438F12.T7 (MSMg01no438_f12.b1)MSMg01-438F12.TJ (MSMg01no438_f12.g1)
ACCAG528961AG528962
length8811,158
length of high quality
(start - end)		254 (63 - 316)---
definitionCHROMAT_FILE: MSMg01no438_f12.b1 PHD_FILE: MSMg01no438_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:05 2005CHROMAT_FILE: MSMg01no438_f12.g1 PHD_FILE: MSMg01no438_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCATT
GTCTCTTCCATGATAGAGCATTTTAAAAGGTGGAAGCAAATGTAACACGT
TAGGAATTTAGTGGGAAGCAAAAGTTGATACAAGTTTTTAAACAGTTGAC
ATATTCTGGGATAATCTTTCCCTGTTAAGAAGGAATTACTGACGTGGGTA
GTGATGTCTCTCACATCTTTAATCCTAGCAGAGGCTAGATGATTTCTGAG
TTCCAGGCCAGTCTGGTCTACATAGTGAGACCCTGTCTGGGGGGGGGGGG
AATAAAAGTGGAGGCTGTTTTTTACCTCCNGCTCTATTCCTATCGTTTGT
CCTTTTCTTTTGCTCACTGTCTGTCCTGTTTCTGTCTTGTCATTTCACTT
CGTTTATTCTTTCCCCCCACCGAATTTTTTATCTCTACTTCCTTACTTGT
AATTTCGTCTTTTTTCTACCATCACCTTACCTTGTTATTACTTTGCTTCT
TCTGTTCCTTTTTCTCTCTTCTCTTTTTCGCTCTGCATATGTTTTTTCAT
TTTTCGTCCTCCTTTTCACCTACTCTATTTTTTTCTCTCTTCCTCTACTC
TAGCTTTATTTTTTGCTCTGCTTCCTTAATTCTCATTTTCTGTTTATTAT
TCTCCCTTCCTCCTCTTTCTCTATATTATTATTTTATTTATCTCTTCATT
TATTCTAAATTTCTCTCTTATGTCTTACCATCTAATTTATTCCTCTCCTT
TTATTCGGCTTCCCCCCTTCGCCGGTGTTTTTTTCTTCTTCCTCTCCTTG
TCTTCGGTCTTTGTCAACTCTCCTTGACCATACCACTATGTTTATCTATA
CTACTTTCTATGTTCTCTCTATTGTTCTCTT

AGTGAGTGTGCGCGGATCGACCGACCACACGCCCTCCTCCCCGCGCGCGG
CGCGCCCACCTCTTTCTGCGTCCCGCTTCACACTCCTCTTCGCTGCCGCA
TCTCCTGTCGCCGCGCACAACACTATACATGCCATCATTCACCTATATGT
ATGACCCATCACACGTGCTCACACTCTACGCGCGGAGCGCGCGCTGGCCG
GTCTCGCCGTGCGGGCTCGCTGGCCCCGAACCCTACGAGCGACGACACGC
ACGACCATACGCGATCAACACCATACTGAGATGAACTGAATCATTACAAG
GAGCGTACGTAGAGATAACGGACGTGTCGCTCTGTATATAAAATCGTCTC
GCCGTCGTCTCGCTATATCTGAATGATATAACTCATACATATACTAAAGC
AAAATGCCACTCTCTACTGGCGCTCTCTCGCTATCTGATTCTTCTTCCAC
AGGTTCAGTCATATACACCTCCTCTGCGTTGGGGATTTAACGACGAGTGC
GACCGAAGCTAGTAACACGGGAGATAGGTTAGTCACTATATAGCGAACAA
CTCGATCTATTATCACAACGACAAGCTGACGGAGATTGCCGCGCCTATCG
ACTCTGGCCGTGACAGACGAGATATATATAAACAACTGGTGCAGGGAGTT
GACGCCTCGCCCTAGTCAAGCTGCAGATGTGAACCCTGAGATATGAGGAC
TGAACAGCGGCCGCGACTCGCGACTACACGATCAGAATATCGGTTTCTAA
TAGTATGAGTCGCGCAAGTGTACGGCATGTAATGGCGGACTGACAGTTTC
GCGCAGCGAGGACGCATAGTCGTTCTCTCGCGCTCGGCACGCGAGCACGC
TCATATGTGATACGTGTAGCTCTCTATGATATAGCTTGTCGCACGATAGG
CAACGAGAATACGTATGTCGCTGCACGCTCTGACTAGATGAATAAATGAT
TAACCACGCTAGTACGTGCTCAGCGTAGTGCGATGTACTCAGATCATCAG
CGCAGTGTTGCTGTGACACGAGCCGGCAGCACGCGTCTCGACCACTTACA
GACGACACAGCCCACCGTGCCCACAGATGCGCATGCTGACAACTCACGAA
CCATCGAGTTATGGGCTCAACGAGATGACGAATGGCGCGGTCTATCACTT
GATCGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_f12.b1 MSMg01no438_f12.b1 CHROMAT_FILE:
MSMg01no438_f12.b1 PHD_FILE: MSMg01no438_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:05 2005
         (254 letters)



>mm_chr7_30565152_30565805
          Length = 654

 Score =  474 bits (245), Expect = e-138
 Identities = 253/257 (98%), Gaps = 3/257 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagcattttaaaaggtggaagcaaatgtaacacgttaggaatttagtgggaagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagagcattttaaaaggtggaagcaaatgtaacacgttaggaatttagtgggaagcaaa 260

                                                                       
Query: 61  agttgatacaagtttttaaacagttgacatattctgggataatctttccctgttaagaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agttgatacaagtttttaaacagttgacatattctgggataatctttcgctgttaagaag 320

                                                                       
Query: 121 gaattactgacgtgggtagtgatgtctctcacatctttaatcctagcagaggctagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattactgacgtgggtagtgatgtctctcacatctttaatcctagcagaggctagatga 380

                                                                       
Query: 181 tttctgagttccaggccagtctggtctacatagtgagaccctgtctgggggggggggg-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 tttctgagttccaggccagtctggtctacatagtgagaccctgtctgggggggggggggg 440

                            
Query: 239 -aataaaagtggaggct 254
            ||||||||||||||||
Sbjct: 441 gaataaaagtggaggct 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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