BAC Information

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BAC

Clone NameMSMg01-438H14
Chromosome7 (Build37)
Map Location 116,350,722 - 116,535,149
singlet/doubletdoublet
Overlap geneStk33, EG668320
Upstream geneOlfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream gene1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438H14.T7 (MSMg01no438_h14.b1)MSMg01-438H14.TJ (MSMg01no438_h14.g1)
ACCAG529059AG529060
length760768
length of high quality
(start - end)		520 (71 - 590)517 (71 - 587)
definitionCHROMAT_FILE: MSMg01no438_h14.b1 PHD_FILE: MSMg01no438_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:16 2005CHROMAT_FILE: MSMg01no438_h14.g1 PHD_FILE: MSMg01no438_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,350,722 - 116,351,241)(116,534,633 - 116,535,149)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCATCCGCGGAATTC
CAGGGGTTTCACATTCCAGAAGATTCCAGAAGACCAGGTAGGACTTTGTT
CTTAGATATGGGGACCTTTGTTCCTAACCGTGGCCAATTTAAAGTCAGCG
GTTCTGCTGAGACTCACGTTCAAAGTGATGGAGCCCAGGCTCTCTCTTCT
AGCTTGCCTTCACCATATGGAGGAATATCACCTCTCTGATGGTTGATGCC
ATTGTCAATTTGACTGGCTTTAGAATCTCCTAGGTGACATAGTTCTGGGA
ACGGGAAGATGCACTCTGATTGTGGGACCACAAGCTGTGTCTCAAGACTG
AATACAAAGAAGAAAGGGGGTGTGCCAGTAACCATTGCTGCCTACTTTTC
AATTGAGGGTACAATATGTCCAGCATTCTCATGCTCTAGTCCCTGTAGTT
TTCTACCATCATGGACTGTACCCTCCTCTAAAACCCTGAGCCAAAATATA
TCCCTTTTCCTTTCAGTTGGTTTAGTCGGGTCACAGCAACGAGCAAAGTC
ATTGATACTAATACATAATGATCTCTAGGGCTCTCTTGGGCCAGGGGTAG
ATTGTGGGCTAGACCACCCGAGGGACTGTCCATCTGAGACTCATAATTGG
GCTCATAGGCCTGATGACTCTCTGTCCATCCATGATCTTGGATTGTGGAA
AAACCTGGTGCTTGTTATCTTCCCAAATCCCCTGGAAATGGTTACTTCTT
TCCTTCCCCC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATGCTCAACTCTCTCCCTATGGGAAGGG
TAAAGAAAATGTTCCTTTTCCTAAAGCTCATGGTTGTCCAGGTTCAGGAA
TGAGTTTTCATGTTTTCTTTTCCCTCTAAGGTACTTAGGGAAACTCAATT
CATTGCTCTCAGGAAGTATTTATCCCCTTTTAACTCCTAAACATTTACCT
AGTATTTTCCATTTTCCCAGAGAAACTTGAGTGTGTAACATCTTTTCCTC
TGCACAGAACCTGGTCTTCTTTTGCTGAACATGATTTCTCAGAGATGCTC
TTTTGTTTCTGATGACTGTAGACAGTTGTTCTCTAATAATAGCAACTTCA
TTTTGGAAGATTGTATGTCTCTTAGAGCAGCACAGTGTAATGCCCCTGGA
ACCTCAATTATCTAATTGTTCTTGATGGATGATAATTTCATTTGTCAGAA
AGTTGAATTCTTGGAAACTCATCGAATATAGCCATTTTTATACTTTAGAG
CAGAGATTTCCAAATTTTTTCCATCCAGACATAACAATGTGAAAAATTAC
ATTGTTACACACACACACACACACACACTTATANTCTTCNCTTCATTAAT
TTTTTTTTTTTATTTTTCTTCCTCTTACCTTAAAAAATGTTTAACAAATA
ACATCCTATGGCGTGTGTTTAACACCTTAATTTTTAATTATATTTTAAAC
CCATCTCCCCCCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_h14.b1 MSMg01no438_h14.b1 CHROMAT_FILE:
MSMg01no438_h14.b1 PHD_FILE: MSMg01no438_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:16 2005
         (520 letters)



>mm_chr7_116350522_116351441
          Length = 920

 Score =  975 bits (504), Expect = 0.0
 Identities = 516/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattccagaagaccaggtaggactttgttcttagatatggggacctttgttcctaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattccagaagaccaggtaggactttgttcttagatatggggacctttgttcctaaccg 260

                                                                       
Query: 61  tggccaatttaaagtcagcggttctgctgagactcacgttcaaagtgatggagcccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccaatttaaagtcagcggttctgctgagactcacgttcaaagtgatggagcccaggc 320

                                                                       
Query: 121 tctctcttctagcttgccttcaccatatggaggaatatcacctctctgatggttgatgcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tctctcttctagcttgccttcaccatatggaggaatatcacctctctgatggttaatgcc 380

                                                                       
Query: 181 attgtcaatttgactggctttagaatctcctaggtgacatagttctgggaacgggaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtcaatttgactggctttagaatctcctaggtgacatagttctgggaacgggaagat 440

                                                                       
Query: 241 gcactctgattgtgggaccacaagctgtgtctcaagactgaatacaaagaagaaaggggg 300
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactctgaatgtgggaccacaagctgtgtctcaagactgaatacaaagaagaaaggggg 500

                                                                       
Query: 301 tgtgccagtaaccattgctgcctacttttcaattgagggtacaatatgtccagcattctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgccagtaaccattgctgcctacttttcaattgagggtacaatatgtccagcattctc 560

                                                                       
Query: 361 atgctctagtccctgtagttttctaccatcatggactgtaccctcctctaaaaccctgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgctctagtccctgtagttttctaccatcatggactgtaccctcctctaaaaccctgag 620

                                                                       
Query: 421 ccaaaatatatcccttttcctttcagttggtttagtcgggtcacagcaacgagcaaagtc 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ccaaaatatatcccttttcctttcagttgctttagtcgggtcacagcaacgagcaaagtc 680

                                                   
Query: 481 attgatactaatacataatgatctctagggctctcttggg 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgatactaatacataatgatctctagggctctcttggg 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_h14.g1 MSMg01no438_h14.g1 CHROMAT_FILE:
MSMg01no438_h14.g1 PHD_FILE: MSMg01no438_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:16 2005
         (517 letters)



>mm_chr7_116534433_116535349
          Length = 917

 Score =  984 bits (509), Expect = 0.0
 Identities = 515/517 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatgctcaactctctccctatgggaagggtaaagaaaatgttccttttcctaaagctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ccatgctcaactctctccctatgggaagggtaaagaaaatgttccttttcctaaagctca 658

                                                                       
Query: 61  tggttgtccaggttcaggaatgagttttcatgttttcttttccctctaaggtacttaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tggttgtccaggttcaggaatgagttttcatgttttcttttccctctaaggtacttaggg 598

                                                                       
Query: 121 aaactcaattcattgctctcaggaagtatttatccccttttaactcctaaacatttacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaactcaattcattgctctcaggaagtatttatccccttttaactcctaaacatttacct 538

                                                                       
Query: 181 agtattttccattttcccagagaaacttgagtgtgtaacatcttttcctctgcacagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agtattttccattttcccagagaaacttgagtgtgtaacatcttttcctctgcacagaac 478

                                                                       
Query: 241 ctggtcttcttttgctgaacatgatttctcagagatgctcttttgtttctgatgactgta 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctggtcttcagttgctgaacatgatttctcagagatgctcttttgtttctgatgactgta 418

                                                                       
Query: 301 gacagttgttctctaataatagcaacttcattttggaagattgtatgtctcttagagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gacagttgttctctaataatagcaacttcattttggaagattgtatgtctcttagagcag 358

                                                                       
Query: 361 cacagtgtaatgcccctggaacctcaattatctaattgttcttgatggatgataatttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cacagtgtaatgcccctggaacctcaattatctaattgttcttgatggatgataatttca 298

                                                                       
Query: 421 tttgtcagaaagttgaattcttggaaactcatcgaatatagccatttttatactttagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttgtcagaaagttgaattcttggaaactcatcgaatatagccatttttatactttagag 238

                                                
Query: 481 cagagatttccaaattttttccatccagacataacaa 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 cagagatttccaaattttttccatccagacataacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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