Query= MSMg01no438_m11.b1 MSMg01no438_m11.b1 CHROMAT_FILE:
MSMg01no438_m11.b1 PHD_FILE: MSMg01no438_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:41 2005
(236 letters)
>mm_chr7_149635913_149636548
Length = 636
Score = 420 bits (217), Expect = e-122
Identities = 232/237 (97%), Gaps = 2/237 (0%)
Strand = Plus / Plus
Query: 1 ctaattaggacaggaagtatataggtaccaggtccatatcaataaagctactaatgtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaattaggacaggaagtatataggtaccaggtccatatcaataaagctactaatgtgat 260
Query: 61 agatatctcctttctttgtgattactcatgaggaaaggaataagagctaggaactcttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatatctcctttctttgtgattactcatgaggaaaggaataagagctaggaactcttca 320
Query: 121 gaaggagattaaaaagatctgggacacattccaaaatgtcttcttgtctcacatagctgt 180
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggagacaaaaaagatctggaacacattccaaaatgtcttcttgtctcacatagctgt 380
Query: 181 cggtaaagactccccctcatc-gtatctctctatccattggagttgtttacatccat 236
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 381 cggtaaagactccccctca-ctgtatctctctatccattggagttgtttacatccat 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no438_m11.g1 MSMg01no438_m11.g1 CHROMAT_FILE:
MSMg01no438_m11.g1 PHD_FILE: MSMg01no438_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:41 2005
(421 letters)
>mm_chr7_149820565_149821384
Length = 820
Score = 723 bits (374), Expect = 0.0
Identities = 409/426 (96%), Gaps = 11/426 (2%)
Strand = Plus / Minus
Query: 1 tcttcatctaacaatagtcaaggtgctggctctgcctgatggggttcaggctgtggcact 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 tcttcatctaacaatagtcaaggtgctggctctgcctgatggggtttaggctgtggcact 561
Query: 61 ggcttcagctttgtccacctgacaacagcaggttgaagggatgcaaggccagttctgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggcttcagctttgtccacctgacaacagcaggttgaagggatgcaaggccagttctgtgc 501
Query: 121 agcttcccatgtgcgtcttcagaatcctacaggcaggcgggcaacagtgtagaatggcca 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 agcttcccatgtgcgtcttcagaatcctacaggcaggagggcaacagtgtagaatggcca 441
Query: 181 ggttctattactaagggctggagctgctggctctctctcagcctaaggagactgagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 ggttctattactaagggctggagctgctggctctctctcagcctagggagactgagaaaa 381
Query: 241 gcagttcttttttat-----agcttccgttccctgcttgtgacatgatggcacatagttt 295
|||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 gcagttct-----atggaagagcttccgttccctgcttgtgacatgatggcacacagttt 326
Query: 296 caactgtctcatgctatggtgagatagtgagaatcactacccatgcctggccatggagga 355
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 caactgtctcatgctatggtgagatagtgagaatcactacc-atgcctggccatggagga 267
Query: 356 ggcatgaggaaggaatgccaccgaggtagcaagccataagccactgccttcaaacagcca 415
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 ggcatgaggaaggaatgccaccgaggtagcaagacataagccactgccttcaaacagcca 207
Query: 416 aaggca 421
|||||
Sbjct: 206 gaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space: 334132
Effective search space used: 334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
