BAC Information

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BAC

Clone NameMSMg01-438N17
Chromosome7 (Build37)
Map Location 60,909,751 - 60,910,134
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620782, LOC100040692, Gm1865, LOC100040718
Downstream geneLOC668789, Mrps33p, LOC622146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438N17.T7 (MSMg01no438_n17.b1)MSMg01-438N17.TJ (MSMg01no438_n17.g1)
ACCAG529351AG529352
length762770
length of high quality
(start - end)		393 (43 - 435)482 (70 - 551)
definitionCHROMAT_FILE: MSMg01no438_n17.b1 PHD_FILE: MSMg01no438_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:47 2005CHROMAT_FILE: MSMg01no438_n17.g1 PHD_FILE: MSMg01no438_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTACCAGTTCTACAGCTCTATCTTCAAATCTTCACCTCCATCACCAC
TTCTGGAAAGGCTCCATGTAGCATGAACTCTCCAGCTCTTCTTTAAAAGA
AGTATTTCTATCAATTTTCTCCTTCTATGATATTACATTTTTAGTAGTAT
AATTCAAAAGTTAGTTTCTGAAGATCCTTTCTTGCAAACGATCAAATTAT
TATCATTCTTCATTCTAAAACATAGATATATGGCTCTAGCTGCATATGTA
GCAGAGAATGGCCTAGTTAGTCATCAATGGAAGGAGAGCCCCTTGGTCCT
GAAAAGGCTCTAAGCCCCAGTGTAGGGAAATGGCAGGAGGAAGCAGAAGT
GGGTGGGTTGGTGAGCAGTGGAAGGGGGGAAGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTNTNNTNTTTTTTTTNNTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTNTTTTNTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTT

TGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTGTATGGAGACAACTTTCTGTATAGAAC
ATTGATAACTCAGCCTCTAAGATCAGTAATTGATAAATGGGAGCTAATGG
AACTGAAAAGCTTCTGAAAGACAAAGAACATCATCAATTGAACACAACAA
CAATATACAGATTGGGAAAATATCTTCACAAATCCTACATCTGACAGAGG
GCTAATATCTAAAATACATAAAGTACTCAAGATGAACAACCAAAGTAACC
CAACTAAAAATAGAGTACAAAGCTAAGCAGGGCATTCTCAATAGAGGAAA
TTCTAATGAGAGAAGCACTTAAAGAAATATTCCAAGTCCTTAATCCTCAG
CAAAATGCAAATCAAAATGACTCTAGATTCCATCTTACACTGGTCAGAAT
TGCAAAGATAATAATAATTAAAAACAAAATAAAGCAAAGAAACAGCAGCA
GCAGCAGCAACAACAACAACAACAACAACAACAACAACNACAAACTCCTG
AGAAAAGCACATACTGGCCAGGAGGATGTAAAGCAAGAGGGACACTCCTC
CATTGTTTAGCAGGAAACAAATTTGTAAAACACTCTGAAAATTATTTGGG
GGGTTCTCGAAAATGGGGAACGTTTTCCCCACAAACCCGGGAACTACTCC
GGGGTTTTACCCAAAAAATTCCCCTTTCCCCCCGGAACGTGGCTCCTATT
TTTTAAAAAATTTTTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_n17.b1 MSMg01no438_n17.b1 CHROMAT_FILE:
MSMg01no438_n17.b1 PHD_FILE: MSMg01no438_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:47 2005
         (393 letters)



>mm_chr7_60909547_60910336
          Length = 790

 Score =  671 bits (347), Expect = 0.0
 Identities = 376/387 (97%), Gaps = 3/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaccagttctacagctctatcttcaaatcttcacctccatcaccacttctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaccagttctacagctctatcttcaaatcttcacctccatcaccacttctgg 264

                                                                       
Query: 65  aaaggctccatgtagcatgaactctccagctcttctttaaaagaagtatttctatcaatt 124
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggctccttgtagcaagaactctccagctcttctttaaaagaagtatttctatcaatt 324

                                                                       
Query: 125 ttctccttctatgatattacatttttagtagtataattcaaaagttagtttctgaagatc 184
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctccttctat---attacatttttagtagtataattcaaaagttagtttctgaagatc 381

                                                                       
Query: 185 ctttcttgcaaacgatcaaattattatcattcttcattctaaaacatagatatatggctc 244
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 382 ctttcttgcaaacgatcaaattattatcattctccgttctaaaacatagatatatggctc 441

                                                                       
Query: 245 tagctgcatatgtagcagagaatggcctagttagtcatcaatggaaggagagccccttgg 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 tagctgcatatgtagcagagaatggcctagttagtcaacaatggaaggagagccccttgg 501

                                                                       
Query: 305 tcctgaaaaggctctaagccccagtgtagggaaatggcaggaggaagcagaagtgggtgg 364
           | |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttctgtgaaggctctaagccccagtgtagggaaatggcaggaggaagcagaagtgggtgg 561

                                      
Query: 365 gttggtgagcagtggaaggggggaagg 391
           |||||||||||||||||||||||||||
Sbjct: 562 gttggtgagcagtggaaggggggaagg 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 790
Length adjustment: 9
Effective length of query: 384
Effective length of database: 781
Effective search space:   299904
Effective search space used:   299904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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