BAC Information

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BAC

Clone NameMSMg01-439H07
Chromosome7 (Build37)
Map Location 102,699,149 - 102,880,283
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666816, LOC100040132, LOC666823
Downstream geneFrda-ps, EG666836, Odz4, LOC670727, LOC666858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439H07.T7 (MSMg01no439_h07.b1)MSMg01-439H07.TJ (MSMg01no439_h07.g1)
ACCAG529805AG529806
length751731
length of high quality
(start - end)		407 (67 - 473)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no439_h07.b1 PHD_FILE: MSMg01no439_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:35 2005CHROMAT_FILE: MSMg01no439_h07.g1 PHD_FILE: MSMg01no439_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,879,878 - 102,880,283)(102,699,149 - 102,699,386)
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGXXXXXXXXXXX
XXXXXXXCAATTCTATAGGAGGTTCCTGTCAAACACTGTAGATAAAACAA
TAACATAAATTAGGCTACATAGCATAACTCCTGGTAATCTATTGTGAAAA
GCAGAGCTCTGTACAATGTCAAGTATTCCTCACAAATTACTGTATCCCAA
AGTTTGCTGATGTTGTTGAGGCAGAAATAAGGCTCAGTGAGTGATCATAT
GACTTCATCCCTATGATCCACATAGCACCCAATCAGACCCAGTAAATTTA
CATTGACAGACCCCTTCAACCAGGAAAGTCTTTTTCTTCTGCTGCCTGGA
GTCTGAGGATATGAGATTCCTCTGTTACTACTTGCTCTTCTGCTTCCATT
CCTGTTACTGTGATAAAATACCTTGACCGAAAAATATCTTTGGAGAGGCA
GGGTCAATTTCTGCTCACAATTCGATTACAGCCCATCATTGCATGGAAGC
AATCTGAGGCACCTAGTCACAGTACAACCATGCGCAAAGAAAGAGGAACA
TGATGCCATGAATGGTTAGCGCTCACCTAGTTTCTCTAATTGACAGTTGT
CCAAAGCCCCAAACCGGGTTATGGGGCTGAACACTGGCAACCTGAATGCT
GGCCCCTCCCCCATAACAATCCAAAACAATCCCTCTCCCAATGGTCCTTA
TGCCAACCCCACCCTAATAAAACCCCCCTCTGAAACCTTCTTTCCCGCTG
A

ATATAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTACCAGCGAAAATCATCAGCAATGGCCAGTTGCATGTATGGTA
TGTGTTACAGTTCTGAGTGGAGGAGGTTGTACTCTCTGGAGAGACTTTTC
TTATTTCAATGTTCTTCTTCTGAAATATTTCCAAGTGGTGTGTATATACA
TCAGTGCCAGCAGACATTTTCAAGAGTGATGCACACTTGGTTCATTAAGG
ACCTGAGCCACATCTGTTTCATGATGGCCACAAATAGGGGATTCATCTTC
TACAAGTTTCTTTTTTTTCTATGACCCACTGCCAACAGACGTGAGGCTTG
ATTCTTTCACCCCTAACTTGGCACCAGGTACTTTCAACTTCTAATTGCAT
TTCCTGGCTTTATCCCCACGCCTGGTTGATGATCCATCCCTCCTTTATTT
CAATGAAACAATATTTTTTACTATAATCGCTTTTCTAGCTTTATTTCCCA
TACCGAGCTACCATCTTCTACACCACTGCGTTTTCCTTTTTAATACTTTT
GTTCCATTCAATTTTTTTCCGTACTTATTGCTTTTTTTACCATTTTCCCT
CATTTTTAATACTCGCTCCAACCTATTCCTATGCTTTCCTATTCTTTCCT
TTCTTTTCCATCGTTCCCCTCCTTTTTCCTCCTTTTTTTCTCCCCCATTT
TTTTCTCCCCCTTTTTTTAACCTCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_h07.b1 MSMg01no439_h07.b1 CHROMAT_FILE:
MSMg01no439_h07.b1 PHD_FILE: MSMg01no439_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:35 2005
         (407 letters)



>mm_chr7_102879759_102880565
          Length = 807

 Score =  746 bits (386), Expect = 0.0
 Identities = 401/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggttcctgtcaaacactgtagataaaacaataacataaattaggctacatagcata 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 525 aggaggttcctgtcaaacactgtagataaagcaataacataaattaggctacatagcata 466

                                                                       
Query: 61  actcctggtaatctattgtgaaaagcagagctctgtacaatgtcaagtattcctcacaaa 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 465 actcctggtaatctattgtgaagagcagagctctgtacaatgtcaagtattcctcacaaa 406

                                                                       
Query: 121 ttactgtatcccaaagtttgctgatgttgttgaggcagaaataaggctcagtgagtgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttactgtatcccaaagtttgctgatgttgttgaggcagaaataaggctcagtgagtgatc 346

                                                                       
Query: 181 atatgacttcatccctatgatccacatagcacccaatcagacccagtaaatttacattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atatgacttcatccctatgatccacatagcacccaatcagacccagtaaatttacattga 286

                                                                       
Query: 241 cagaccccttcaaccaggaaagtctttttcttctgctgcctggagtctgaggatatgaga 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagaccccttcgaccaggaaagtctttttcttctgctgcctggagtctgaggatatgaga 226

                                                                       
Query: 301 ttcctctgttactacttgctcttctgcttccattcctgttactgtgataaaataccttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttcctctgttactacttgctcttctgcttccattcctgttactgtgataaaataccttga 166

                                                         
Query: 361 ccgaaaaatatctttggagaggcagggtcaatttctgctcacaatt 406
           || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 165 cctaaaaatatctttggagaggcagggtccatttctgctcacaatt 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_h07.g1 MSMg01no439_h07.g1 CHROMAT_FILE:
MSMg01no439_h07.g1 PHD_FILE: MSMg01no439_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:35 2005
         (238 letters)



>mm_chr7_102698949_102699586
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagcaatggccagttgcatgtatggtatgtgttacagttctgagtggaggaggttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagcaatggccagttgcatgtatggtatgtgttacagttctgagtggaggaggttgta 260

                                                                       
Query: 61  ctctctggagagacttttcttatttcaatgttcttcttctgaaatatttccaagtggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctggagagacttttcttatttcaatgttcttcttctgaaatatttccaagtggtgt 320

                                                                       
Query: 121 gtatatacatcagtgccagcagacattttcaagagtgatgcacacttggttcattaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||
Sbjct: 321 gtatatacatcagtgccagcagacattttcaagagtgatgcacacttcgttcaggaagga 380

                                                                     
Query: 181 cctgagccacatctgtttcatgatggccacaaataggggattcatcttctacaagttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgagccacatctgtttcatgatggccacaaataggggattcatcttctacaagttt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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