BAC Information

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BAC

Clone NameMSMg01-439J05
Chromosome7 (Build37)
Map Location 148,031,987 - 148,199,214
singlet/doubletdoublet
Overlap geneScgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3
Upstream geneGpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik
Downstream geneIfitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439J05.T7 (MSMg01no439_j05.b1)MSMg01-439J05.TJ (MSMg01no439_j05.g1)
ACCAG529896AG529897
length778734
length of high quality
(start - end)
240 (75 - 314)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no439_j05.b1 PHD_FILE: MSMg01no439_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:44 2005CHROMAT_FILE: MSMg01no439_j05.g1 PHD_FILE: MSMg01no439_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,198,975 - 148,199,214)(148,031,987 - 148,032,229)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGATACTATCCGCGGA
ATTCATTTGGTTCCCAGATGCAGGTAGCAGATGCTAAGTAGGTCTGAAAG
GTAAGGGATACTAAATCAGAGAACATGGACACTGGCCGGAACTGTCCCCT
GAGACCAGAGTGAGGACAGAACCTGACAGGTAAAGTGTCAACAGTTGTGC
ATCAGGGGCAGAAGTGGGTCATCCTGGATGGAGCAAAGGCTGACCCTGAC
CCTTGTTCTTACAGCAGGGCTGGTCAATCCCTGTCCCTCAGATGATCCCT
GGGGGCAGAGATTGTCTCTTTGTTTTTAACAAAGAAGATGGAAAAATCCA
AAGACTGAGTCTCAACTTCCCCTGATGTTTCATATGGGAAGGAGCGAGTC
AGACAGGAAGAGGTCTTCCGCCCACCTCACTTGGGGGCCCCAGGAAGACA
CTGACTAGGGTGGCCATACATGCAGGCCTGAGTATAGCTCCCCACCTCCG
TGGGTGTTGAGATGATCCTGTCCATCGCGTGCCTGTCAACGCCTTGACCT
GCCTTGTTCCTCCATCCTCACCTAGGCCCCCCTGTTAATACCTACTTCCC
GCGAATTGAACTATAGCCCCATAAATCCCCCCTCATTTTCCCGTTCTTCC
CACCTTCTTTTTCTTTCTCGGTTCTTCTTTTCACTCCCTTCTCCTTTCTC
TTTTTCCTCCTTTCTCTTTATCCCCTCTCCCATTCCTTTACCCTGCCCTC
CTTATTCCCCTTCATCTACCCCTTTTCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCGCAAAATTCCTGCAAACACTCCTGGTGGGGACCCCGG
AAGAACTCTACGAAGGGCCCCTGGGCAAGTACAATGTCAATGACATGGCC
AAGTCAGCGCTGAGCGAGCTCAAGTCCTGCATCGATGAACTACAGCCTGT
GCATAAGGAGCAACTGGTCAAGCTGCTGGTAATCGGGCTGGGACTCTTTT
CCCCGAATGTTTGCAGTTCTTCCGAGACCCTCCTGGTGCTGGATCACCAG
TCCTCCCCGATTCCCTGANCTTCCATCCGCCAGCAGAGATGGAGACCTCG
CAGATATTTTTCCTAAGTCTCTTACAACTGCTTCCCCCACCCCATAAGAA
CTACATCCCACCTATCCCCCACATGTGTATTCCTTCTTTCCCCATTGTGT
TAGGATATGTGGACCATTATGCTTACCGATCCGTTTTCTCCCCTGTTTTC
CCCATTCCTGCTTTCCCCTGTCACTGCCCCCCCCTTTCGTTTTTTTTCAA
TTTTTTTCCGCTCCCCCTTTTTCCTTCCTTTATTTATTTCTTTAACCTTT
TCTACTCATTTCTCTCTCTCCCCCCCTATTCCTTCCCTTACCTTTTTTTT
TTTTCCCTTGCCCTTCTCCCCCCCCCATTTTCCTCCCTTTTTTCTCCCCC
TTTTTTTTCTCCCCTTTTTTTCACCTCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_j05.b1 MSMg01no439_j05.b1 CHROMAT_FILE:
MSMg01no439_j05.b1 PHD_FILE: MSMg01no439_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:44 2005
         (240 letters)



>mm_chr7_148198775_148199414
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcagatgctaagtaggtctgaaaggtaagggatactaaatcagagaacatggacactg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 tagcagatgctaagtaggtctgaaaggtaagggatactaaatcagagaacatgggcactg 381

                                                                       
Query: 61  gccggaactgtcccctgagaccagagtgaggacagaacctgacaggtaaagtgtcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gccggaactgtcccctgagaccagagtgaggacagaacctgacaggtaaagtgtcaacag 321

                                                                       
Query: 121 ttgtgcatcaggggcagaagtgggtcatcctggatggagcaaaggctgaccctgaccctt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 ttgtgcatcaggggcagaagtgggtcatcctgggtggagcaaaggctgaccctgaccctt 261

                                                                       
Query: 181 gttcttacagcagggctggtcaatccctgtccctcagatgatccctgggggcagagattg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 gttcttacagcagggctggtcaatccctgtccctctgatgatccctgggggcagagattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no439_j05.g1 MSMg01no439_j05.g1 CHROMAT_FILE:
MSMg01no439_j05.g1 PHD_FILE: MSMg01no439_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:44 2005
         (245 letters)



>mm_chr7_148031787_148032431
          Length = 645

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctgcaaacactcctggtggggaccccggaagaactctacgaagggcccctgggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctgcaaacactcctggtggggaccccggaagaactctacgaagggcccctgggcaa 260

                                                                       
Query: 61  gtacaatgtcaatgacatggccaagtcagcgctgagcgagctcaagtcctgcatcgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacaatgtcaatgacatggccaagtcagcgctgagcgagctcaagtcctgcatcgatga 320

                                                                       
Query: 121 actacagcctgtgcataaggagcaactggtcaagctgctggtaatcgggctgggactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 actacagcctgtgcataaggagcaactggtcaagctgctggtaatcgggctgggactccc 380

                                                                       
Query: 181 ttccccgaatgtttgcagttcttccgagaccctcctggtgctggatcaccagtcctcccc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccccgaatgtttgcagttcttccgagaccctcctggtgctggatcaccagtcctcccc 440

              
Query: 241 gat 243
           |||
Sbjct: 441 gat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)