Query= MSMg01no439_m24.b1 MSMg01no439_m24.b1 CHROMAT_FILE:
MSMg01no439_m24.b1 PHD_FILE: MSMg01no439_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:02 2005
(409 letters)
>mm_chr7_62384697_62385505
Length = 809
Score = 775 bits (401), Expect = 0.0
Identities = 407/409 (99%)
Strand = Plus / Plus
Query: 1 caaagatcttaagacaatgaaaactctgatgtgcatttgtgtgacagtgaaacagtaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagatcttaagacaatgaaaactctgatgtgcatttgtgtgacagtgaaacagtaact 260
Query: 61 gtctctgtttttttctggtctttatgatccaaataaagaatcaaaagaagagtaggtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctctgtttttttctggtctttatgatccaaataaagaatcaaaagaagagtaggtcag 320
Query: 121 aatgcaaatgaaaagaaggtttccttctcacggctgcttctgatgacatagtcaattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgcaaatgaaaagaaggtttccttctcacggctgcttctgatgacatagtcaattaat 380
Query: 181 ataattagaatatttctggatggaatccatgctctgaaatttctatatataaagtgatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattagaatatttctggatggaatccatgctctgaaatttctatatataaagtgatgg 440
Query: 241 ctcaaatatcatgccaaatatcctgtcatattttatcacagaaggggaagtaaagcagct 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ctcaaatatcatgccaaatatcctgtcatattttatcacagaaggggaagcaaagcagct 500
Query: 301 cactgtcctacttttaaaaggccataaaggaaatgaagacagcaaacatttctaaaaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgtcctacttttaaaaggccataaaggaaatgaagacagcaaacatttctaaaaggg 560
Query: 361 atggcaccttgaatcatggtaggagtagcaactgtttcctctgcctgta 409
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 atggcaccttgaatcatggtagaagtagcaactgtttcctctgcctgta 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_m24.g1 MSMg01no439_m24.g1 CHROMAT_FILE:
MSMg01no439_m24.g1 PHD_FILE: MSMg01no439_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:02 2005
(496 letters)
>mm_chr7_62558712_62559607
Length = 896
Score = 880 bits (455), Expect = 0.0
Identities = 486/498 (97%), Gaps = 4/498 (0%)
Strand = Plus / Minus
Query: 1 agatctcccgtatccatataaatggtaggattatcagaactctcctagagcctcagtcct 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 641 agatctcccgtatccatataaatgataggattatcagaactctcctagagcctcagtcct 582
Query: 61 ggagctgcagaggtgatcacctataggtgtatcccgaggctcacaacccagtgaactgca 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggagccgcagaggtgatcacctataggtgtatcccgaggctcacaacccagtgaactgca 522
Query: 121 gctttagtgagtgatcctatttcaagagaaaatgatggagaatgaaagaaaaggatcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gctttagtgagtgatcctatttcaagagaaaatgatggagaatgaaagaaaaggatcctg 462
Query: 181 aagtcttctggcctatag--acacattcatgggcacagactcacatgtataccatacata 238
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 461 aagtcttctggcctataggtacac--tcatgggcacagactcacatgtataccatacata 404
Query: 239 ggcatataattatataaaaagatggttactgtgacatatacagacttgctcttaaaacat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggcatataattatataaaaagatggttactgtgacatatacagacttgctcttaaaacat 344
Query: 299 tctattgatttattaaatgctttctatgagaactaaagaatattattttacattgagtct 358
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tccattgatttatgaaatgctttctatgagaactaaagaatattattttacattgagtcc 284
Query: 359 acaagatgctaaatatacataaaattaactcttataaaaagtatttataagagtatttat 418
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 acaagatgttaaatatacataaaattaactcttataaaaagtatttgtaagagtatttat 224
Query: 419 aatccaccatggattaaattgttctggagagatggtgcagtggttaanatcatgggctgg 478
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 223 aatccaccatggattaaattgttctggagagatggtgcagtggttaaaatcatgggctgg 164
Query: 479 tatttcagaggggttgag 496
||||||||||||||||||
Sbjct: 163 tatttcagaggggttgag 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
