BAC Information

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BAC

Clone NameMSMg01-440A20
Chromosome7 (Build37)
Map Location 117,950,005 - 117,950,376
singlet/doubletsinglet
Overlap geneAmpd3
Upstream geneScube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik
Downstream geneRnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440A20.T7 (MSMg01no440_a20.b1)MSMg01-440A20.TJ (MSMg01no440_a20.g1)
ACCAG530259AG530260
length7831,282
length of high quality
(start - end)		448 (50 - 497)---
definitionCHROMAT_FILE: MSMg01no440_a20.b1 PHD_FILE: MSMg01no440_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:20 2005CHROMAT_FILE: MSMg01no440_a20.g1 PHD_FILE: MSMg01no440_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCTTTGTCCCATAGGCCTTAAAATGAGAGCATAGGAATGTT
GCAGCCCAGAGCAAGGGTTACTAGTCAAGGAAGGATTCCAAATTCTGTGC
TTATTATTATGCTAAAATTATGCTGTAGGTGACAGAGAGCTGCAGGACTG
CCTCAGTGTGTTTTTCTGCAGTGCTTTTATGGAGGACCTGAGTTCAGTTT
GAGGCAGTTCACAATGACCTGTAACTGCAGCTCTAGGATCCGACAGCCTC
TGCAGGCACCTGCCTTGCTCATGCACAGACCTACACACACACACACACAC
ACACACACCAGCATGCATGCACAAACACAAAAATAAAAATTAGCCTTTCA
AAAGGAAAGGAAAAGGGAACTAGAAATACTAAATGGCTGCTAATGCTGTT
TCTGTAAAGAAAGTAAGATTTTTTTTTAGCTTTTTTTTTTTCATCTAAAA
TGTAATGGTTGGTTATTTTATGGCTAAAAGTGAGCCAAAATTGGTTTTGT
TGGGTTTCCCTGCTTTAAAATAAGTTTTTTGAGGGGCTGAGGGTTTGGGG
GGAAAATTAAAATTAACATTGCGAAAAATCCTTGTCACCACAATCTCGAA
TAAGACCGCACCACCTTCTTACTTTCTCATACATCCACCTCCCTCCTCGC
TCATTCTTATCTTTTCCTCTGCTTTAACTATTCTCTGTATCTCGTCCATC
TTTTCCTCAAATCCCACTCTTATTCCTCTTTCG

CATGAATCATGGGAGAATAGAGTAGGATATTGGGGATTTGGTTCTTGGAT
AGTCTGAAGATTTCTTCGNTGAATCCTACTTTGTAGGGCAGATCGTCCCC
TACCTCCACTCTCCCAGATCTTCATACTTGCCGAAAACTGTACACGTCAG
AGTTGGTAAGTATAGTATCCCGGAGAGCAACAACACCCATCTCACAACCA
ACCAATTATTGTATATCTAGAGGAAAGAAAGGATAGCTAGTTGGTAGGAA
AGGAGTATAAGGCGTTTGTACTCATACTATACTGATTTGTGCTATTCACT
TCCCCTTTCTTACAGTCATGACCTTCTCCATCATGTGCGCTCGTCTGGCG
CGTATATACGCCGCTCCTCACTACGTTATTATAGTACTAACATATAATAC
TCACTTTCAATATTACATTCGAAGCGCATGGATGAGAACTTACGTATATT
TACTGAATGTTTATATGAACACGATTAAACTGAAAGTGAATAATAAATAT
GTAGTGCTGTATAATTTTGTCTTTGTCAGCGTTGTTGTATTTTGGAGTGT
GTAGGATAGCGAATTAGCATCTATCCTACTTTTGAGATATTTGTTGCTGC
GTTTCCTCGTTTGAACAGTAGAGTTCCTCATTTACACTATTATCCAATCT
ATTTGATCACCGAGGCAACATCTTCTTCGCTTCTAACTCTTCGAATGCTC
GCACTCGAAACTACCTACTCTTCTGAACATATGATTATTATCCGAGTGAT
ACATTTTCGTCACGGCTACTGTACTTCACTCATCTTATGACGCATCCATA
ATTCTCTGTATATAGTACGGAATGATATATCTGTCCCTTACAGATTGCTC
TTCGCCTGATAACTGATATTATCTATCTGTATGTTGTATNTGTTCTAAGA
GTAGAGTTACCTTTGATGTTTGATCTGTGATGTCGTTTCATTTATAGATA
TATCATCGAGACTATGAGTGCAATATTATAGAGATACATATTCTAATATG
AGGTACATCCTCACTAATCCACACATACCAGTTTCACCATTGATACCCCA
TAATTACTACGTTCTCGGTGTGCTTGACGTTCGTACCCGCTCGAATATAT
GTATGTTACAGAATGGATGATCATATTTCATTACTGTCTGTGTGGTTAGT
ACACCGTGAGCCGCATGCACAGTACTCGTCCATCTAGTCTACATTCGCTA
CACTACATTACAGTCTATTAGTCTATGACCCTGTTCGATCCTCACTACTT
ACAATATCTCGTGATTGGTGCATCAAGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_a20.b1 MSMg01no440_a20.b1 CHROMAT_FILE:
MSMg01no440_a20.b1 PHD_FILE: MSMg01no440_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:20 2005
         (448 letters)



>mm_chr7_117950005_117950852
          Length = 848

 Score =  630 bits (326), Expect = 0.0
 Identities = 351/372 (94%), Gaps = 20/372 (5%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttgtcccataggccttaaaatgagagcataggaatgttgcagcccagagcaag 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaattctttgtcccaaaggccttaaaatgagagcataggaatgttgcagcccagagcaag 313

                                                                       
Query: 67  ggttactagtcaaggaaggattccaaattctgtgcttattattatgctaaaattatgctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggttactagtcaaggaaggattccaaattctgtgcttattattatgctaaaattatgctg 253

                                                                       
Query: 127 taggtgacagagagctgcaggactgcctcagtgtgtttttctgcagtgcttttatggagg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taggtgacagagagctgcaggactgcctcagtgtgtttttctgcagtgcttttatggagg 193

                                                                       
Query: 187 acctgagttcagtttgaggcagttcacaatgacctgtaactgcagctctaggatccgaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 acctgagttcagtttgaggcagttcacaatgacctgtaactgcagctctaggatccgaca 133

                                                                       
Query: 247 gcctctgcaggcacctgccttgctcatgcacagacct--------------------aca 286
           |||||||||||||||||||||||||||||||||||||                    |||
Sbjct: 132 gcctctgcaggcacctgccttgctcatgcacagacctacacacacacacacacacacaca 73

                                                                       
Query: 287 cacacacacacacacacacacaccagcatgcatgcacaaacacaaaaataaaaattagcc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  cacacacacacacacacacacaccagcatgcatgcacaaacacaaaaataaaaattagcc 13

                       
Query: 347 tttcaaaaggaa 358
           ||||||||||||
Sbjct: 12  tttcaaaaggaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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